DagsHub-Datasets
/
dandiarchive-dataset


  
1

	
            {"id":"DANDI:000944/draft","url":"https://dandiarchive.org/dandiset/000944/draft","name":"Two-photon calcium imaging of responses of Layer 2/3 excitatory neurons to drifting gratings and natural movies in the mouse visual cortex","about":[],"access":[{"status":"dandi:EmbargoedAccess","schemaKey":"AccessRequirements"}],"license":["spdx:CC-BY-4.0"],"version":"draft","@context":"https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.7/context.json","citation":"Arkhipov, Anton; Garrett, Marina; Groblewski, Peter; Zobeiri, Omid; Dai, Kael; Willford, Ali; Caldejon, Shiella; Seid, Sam; Berry, Carson (2024) Two-photon calcium imaging of responses of Layer 2/3 excitatory neurons to drifting gratings and natural movies in the mouse visual cortex (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000944/draft","keywords":["mouse","2-photon calcium imaging","visual cortex","excitatory","Layer 2/3","Cux2"],"protocol":[],"schemaKey":"Dandiset","identifier":"DANDI:000944","repository":"https://dandiarchive.org","contributor":[{"name":"Arkhipov, Anton","email":"antona@alleninstitute.org","roleName":["dcite:ContactPerson","dcite:ProjectLeader"],"schemaKey":"Person","identifier":"0000-0003-1106-8310","includeInCitation":true},{"name":"Garrett, Marina","email":"marinag@alleninstitute.org","roleName":["dcite:ProjectLeader"],"schemaKey":"Person","identifier":"0000-0002-5271-2291","includeInCitation":true},{"name":"Groblewski, Peter","email":"peterg@alleninstitute.org","roleName":["dcite:Producer"],"schemaKey":"Person","includeInCitation":true},{"name":"Zobeiri, Omid","email":"omid.zobeiri@alleninstitute.org","roleName":["dcite:Researcher"],"schemaKey":"Person","identifier":"0000-0002-1813-1354","includeInCitation":true},{"name":"Dai, Kael","email":"kaeld@alleninstitute.org","roleName":["dcite:Software"],"schemaKey":"Person","identifier":"0000-0002-2147-5895","includeInCitation":true},{"name":"Willford, Ali","email":"aliw@alleninstitute.org","roleName":["dcite:Producer"],"schemaKey":"Person","includeInCitation":true},{"name":"Caldejon, Shiella","email":"shiellac@alleninstitute.org","roleName":["dcite:Producer"],"schemaKey":"Person","includeInCitation":true},{"name":"Seid, Sam","email":"sams@alleninstitute.org","roleName":["dcite:Validation"],"schemaKey":"Person","includeInCitation":true},{"name":"Berry, Carson","email":"carson.berry@alleninstitute.org","roleName":["dcite:Software"],"schemaKey":"Person","identifier":"0000-0002-5905-8202","includeInCitation":true},{"name":"National Institutes of Health (NIH)","roleName":["dcite:Funder"],"schemaKey":"Organization","awardNumber":"1 U01 MH 130907-02"}],"dateCreated":"2024-03-29T21:40:14.461383+00:00","description":"This dataset contains recordings of neural activity using two-photon calcium imaging from the mouse primary visual cortex (VISp). The mice had GCaMP6f expressed in their Layer 2/3 excitatory neurons (Cux2). The experiments were conducted using the same data collection pipeline as the Allen Brain Observatory (de Vries et al., Nature Neurosci., 2020), with an improved microscopy system that uses multi-plane imaging. A camera-based eye tracking system and running wheel were used to track pupil dynamics and locomotion. The recordings were performed during two different visual stimulus sets: 1. STAGE_0: Natural movie clips. 2. STAGE_1: Drifting gratings presented as full-field stimuli (approximately 120x90 degrees of visual space). These gratings were presented in 8 directions, at 5 contrasts (5%, 10%, 20%, 40%, 80%), as well as 8 directions, and 5 temporal frequencies (0.5, 1, 2, 4, 8 Hz).","studyTarget":["To charactrize the contrast/temporal frequency tuning of different cell types in the mouse visual cortex"],"assetsSummary":{"schemaKey":"AssetsSummary","numberOfBytes":0,"numberOfFiles":0},"schemaVersion":"0.6.7","ethicsApproval":[],"wasGeneratedBy":[],"relatedResource":[],"manifestLocation":["https://api.dandiarchive.org/api/dandisets/000944/versions/draft/assets/"]}