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stages:
parse_labels:
cmd: bohr parse-labels
deps:
- labels
outs:
- labels.py:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__datasets_bugginess-train:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
datasets.bugginess-train
deps:
- data/bugginess/train/bug_sample.csv
- data/bugginess/train/bug_sample_files.csv
- data/bugginess/train/bug_sample_issues.csv
- datasets/bugginess-train.py
- heuristics/bugginess.py
- heuristics/keywords
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.bugginess-train.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_datasets.bugginess-train.json:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__datasets_1151-commits:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
datasets.1151-commits
deps:
- data/bugginess/test/1151-commits.csv
- datasets/1151-commits.py
- heuristics/bugginess.py
- heuristics/keywords
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.1151-commits.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_datasets.1151-commits.json:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__datasets_berger:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
datasets.berger
deps:
- data/bugginess/test/berger.csv
- datasets/berger.py
- heuristics/bugginess.py
- heuristics/keywords
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.berger.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_datasets.berger.json:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__datasets_herzig:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
datasets.herzig
deps:
- data/bugginess/test/herzig.csv
- datasets/herzig.py
- heuristics/bugginess.py
- heuristics/keywords
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.herzig.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_datasets.herzig.json:
cache: false
bugginess_combine_heuristics:
cmd: bohr apply-heuristics bugginess
deps:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.1151-commits.pkl
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.berger.pkl
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.bugginess-train.pkl
- generated/bugginess/heuristics.bugginess/heuristic_matrix_datasets.herzig.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/analysis_datasets.1151-commits.csv:
cache: false
- generated/bugginess/analysis_datasets.berger.csv:
cache: false
- generated/bugginess/analysis_datasets.bugginess-train.csv:
cache: false
- generated/bugginess/analysis_datasets.herzig.csv:
cache: false
- generated/bugginess/heuristic_matrix_datasets.1151-commits.pkl
- generated/bugginess/heuristic_matrix_datasets.berger.pkl
- generated/bugginess/heuristic_matrix_datasets.bugginess-train.pkl
- generated/bugginess/heuristic_matrix_datasets.herzig.pkl
metrics:
- metrics/bugginess/analysis_datasets.1151-commits.json:
cache: false
- metrics/bugginess/analysis_datasets.berger.json:
cache: false
- metrics/bugginess/analysis_datasets.bugginess-train.json:
cache: false
- metrics/bugginess/analysis_datasets.herzig.json:
cache: false
- metrics/bugginess/heuristic_metrics_datasets.1151-commits.json:
cache: false
- metrics/bugginess/heuristic_metrics_datasets.berger.json:
cache: false
- metrics/bugginess/heuristic_metrics_datasets.bugginess-train.json:
cache: false
- metrics/bugginess/heuristic_metrics_datasets.herzig.json:
cache: false
bugginess_train_label_model:
cmd: bohr train-label-model bugginess datasets.bugginess-train
deps:
- data/bugginess/test/1151-commits.csv
- data/bugginess/test/berger.csv
- data/bugginess/test/herzig.csv
- datasets/1151-commits.py
- datasets/berger.py
- datasets/herzig.py
- generated/bugginess/heuristic_matrix_datasets.1151-commits.pkl
- generated/bugginess/heuristic_matrix_datasets.berger.pkl
- generated/bugginess/heuristic_matrix_datasets.bugginess-train.pkl
- generated/bugginess/heuristic_matrix_datasets.herzig.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/label_model.pkl
metrics:
- metrics/bugginess/label_model_metrics.json:
cache: false
bugginess_label_dataset_datasets_bugginess-train:
cmd: bohr label-dataset bugginess datasets.bugginess-train
deps:
- data/bugginess/train/bug_sample.csv
- data/bugginess/train/bug_sample_files.csv
- data/bugginess/train/bug_sample_issues.csv
- datasets/bugginess-train.py
- generated/bugginess/heuristic_matrix_datasets.bugginess-train.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/datasets.bugginess-train.labeled.csv
bugginess_label_dataset_datasets_1151-commits:
cmd: bohr label-dataset bugginess datasets.1151-commits
deps:
- data/bugginess/test/1151-commits.csv
- datasets/1151-commits.py
- generated/bugginess/heuristic_matrix_datasets.1151-commits.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/datasets.1151-commits.labeled.csv
bugginess_label_dataset_datasets_berger:
cmd: bohr label-dataset bugginess datasets.berger
deps:
- data/bugginess/test/berger.csv
- datasets/berger.py
- generated/bugginess/heuristic_matrix_datasets.berger.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/datasets.berger.labeled.csv
bugginess_label_dataset_datasets_herzig:
cmd: bohr label-dataset bugginess datasets.herzig
deps:
- data/bugginess/test/herzig.csv
- datasets/herzig.py
- generated/bugginess/heuristic_matrix_datasets.herzig.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/datasets.herzig.labeled.csv
smells_apply_heuristics__heuristics_smells__datasets_smells-train:
cmd: bohr apply-heuristics smells --heuristic-group heuristics.smells --dataset
datasets.smells-train
deps:
- data/smells/train.csv
- datasets/smells-train.py
- heuristics/keywords
- heuristics/smells.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/heuristics.smells/heuristic_matrix_datasets.smells-train.pkl
metrics:
- metrics/smells/heuristics.smells/heuristic_metrics_datasets.smells-train.json:
cache: false
smells_apply_heuristics__heuristics_smells__datasets_smells-test:
cmd: bohr apply-heuristics smells --heuristic-group heuristics.smells --dataset
datasets.smells-test
deps:
- data/smells/test.csv
- datasets/smells-test.py
- heuristics/keywords
- heuristics/smells.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/heuristics.smells/heuristic_matrix_datasets.smells-test.pkl
metrics:
- metrics/smells/heuristics.smells/heuristic_metrics_datasets.smells-test.json:
cache: false
smells_combine_heuristics:
cmd: bohr apply-heuristics smells
deps:
- generated/smells/heuristics.smells/heuristic_matrix_datasets.smells-test.pkl
- generated/smells/heuristics.smells/heuristic_matrix_datasets.smells-train.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/analysis_datasets.smells-test.csv:
cache: false
- generated/smells/analysis_datasets.smells-train.csv:
cache: false
- generated/smells/heuristic_matrix_datasets.smells-test.pkl
- generated/smells/heuristic_matrix_datasets.smells-train.pkl
metrics:
- metrics/smells/analysis_datasets.smells-test.json:
cache: false
- metrics/smells/analysis_datasets.smells-train.json:
cache: false
- metrics/smells/heuristic_metrics_datasets.smells-test.json:
cache: false
- metrics/smells/heuristic_metrics_datasets.smells-train.json:
cache: false
smells_train_label_model:
cmd: bohr train-label-model smells datasets.smells-train
deps:
- data/smells/test.csv
- datasets/smells-test.py
- generated/smells/heuristic_matrix_datasets.smells-test.pkl
- generated/smells/heuristic_matrix_datasets.smells-train.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/label_model.pkl
metrics:
- metrics/smells/label_model_metrics.json:
cache: false
smells_label_dataset_datasets_smells-train:
cmd: bohr label-dataset smells datasets.smells-train
deps:
- data/smells/train.csv
- datasets/smells-train.py
- generated/smells/heuristic_matrix_datasets.smells-train.pkl
- generated/smells/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/datasets.smells-train.labeled.csv
smells_label_dataset_datasets_smells-test:
cmd: bohr label-dataset smells datasets.smells-test
deps:
- data/smells/test.csv
- datasets/smells-test.py
- generated/smells/heuristic_matrix_datasets.smells-test.pkl
- generated/smells/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/datasets.smells-test.labeled.csv
bugginess_combine_labels_1151-commits:
cmd: python classifiers/bugginess-transformer/combine_labels.py labeled-datasets/datasets.1151-commits.labeled.csv
metrics/bugginess/transformer/1151-commits/assigned_labels.csv labeled-datasets/datasets.1151-commits.labeled.both.csv
deps:
- classifiers/bugginess-transformer/combine_labels.py
- labeled-datasets/datasets.1151-commits.labeled.csv
- metrics/bugginess/transformer/1151-commits/assigned_labels.csv
outs:
- labeled-datasets/datasets.1151-commits.labeled.both.csv:
cache: false
bugginess_transformer_test_herzig:
cmd: bash classifiers/bugginess-transformer/test.sh data/bugginess/test/herzig.csv
metrics/bugginess/transformer/herzig
deps:
- classifiers/bugginess-transformer/run.py
- classifiers/bugginess-transformer/test.sh
- data/bugginess/test/herzig.csv
- models/config.json
- models/merges.txt
- models/pytorch_model.bin
- models/special_tokens_map.json
- models/tokenizer_config.json
- models/training_args.bin
- models/vocab.json
- requirements.txt
metrics:
- metrics/bugginess/transformer/herzig/eval_results.txt:
cache: false
bugginess_transformer_test_1151-commits:
cmd: bash classifiers/bugginess-transformer/test.sh data/bugginess/test/1151-commits.csv
metrics/bugginess/transformer/1151-commits
deps:
- classifiers/bugginess-transformer/run.py
- classifiers/bugginess-transformer/test.sh
- data/bugginess/test/1151-commits.csv
- models/config.json
- models/merges.txt
- models/pytorch_model.bin
- models/special_tokens_map.json
- models/tokenizer_config.json
- models/training_args.bin
- models/vocab.json
- requirements.txt
metrics:
- metrics/bugginess/transformer/1151-commits/eval_results.txt:
cache: false
preprocess_smells:
cmd: bash data-preprocessing/smells.sh
deps:
- data-preprocessing/smells.sh
- downloaded-data/smells-madeyski.csv
outs:
- data/smells/test.csv
- data/smells/train.csv
preprocess_bugginess_test:
cmd: cp downloaded-data/{1151-commits.csv,berger.csv,herzig.csv} data/bugginess/test
deps:
- downloaded-data/1151-commits.csv
- downloaded-data/berger.csv
- downloaded-data/herzig.csv
outs:
- data/bugginess/test/1151-commits.csv
- data/bugginess/test/berger.csv
- data/bugginess/test/herzig.csv
bugginess_transformer_train:
cmd: bash classifiers/bugginess-transformer/train.sh labeled-data/bugginess.csv
deps:
- classifiers/bugginess-transformer/run.py
- classifiers/bugginess-transformer/train.sh
- labeled-datasets/datasets.bugginess-train.labeled.csv
- requirements.txt
outs:
- models/config.json:
cache: false
- models/merges.txt:
cache: false
- models/pytorch_model.bin
- models/special_tokens_map.json:
cache: false
- models/tokenizer_config.json:
cache: false
- models/training_args.bin
- models/vocab.json:
cache: false
bugginess_transformer_label_1151-commits:
cmd: bash classifiers/bugginess-transformer/label.sh data/bugginess/test/1151-commits.csv
metrics/bugginess/transformer/1151-commits
deps:
- classifiers/bugginess-transformer/label.sh
- classifiers/bugginess-transformer/run.py
- data/bugginess/test/1151-commits.csv
- models/config.json
- models/merges.txt
- models/pytorch_model.bin
- models/special_tokens_map.json
- models/tokenizer_config.json
- models/training_args.bin
- models/vocab.json
- requirements.txt
metrics:
- metrics/bugginess/transformer/1151-commits/assigned_labels.csv:
cache: false
preprocess_bugginess_train:
cmd: 7z x downloaded-data/bugginess_train.7z -odata/bugginess
deps:
- downloaded-data/bugginess_train.7z
outs:
- data/bugginess/train/bug_sample.csv:
cache: false
- data/bugginess/train/bug_sample_files.csv:
cache: false
- data/bugginess/train/bug_sample_issues.csv:
cache: false
bugginess_transformer_test_berger:
cmd: bash classifiers/bugginess-transformer/test.sh data/bugginess/test/berger.csv
metrics/bugginess/transformer/berger
deps:
- classifiers/bugginess-transformer/run.py
- classifiers/bugginess-transformer/test.sh
- data/bugginess/test/berger.csv
- models/config.json
- models/merges.txt
- models/pytorch_model.bin
- models/special_tokens_map.json
- models/tokenizer_config.json
- models/training_args.bin
- models/vocab.json
- requirements.txt
metrics:
- metrics/bugginess/transformer/berger/eval_results.txt:
cache: false
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