auxilin-prediction/notebooks

This is an overview of the markdown contents of all the notebooks / scripts in this directory.

00_intro_fig1_fig2

plot curves (for intro fig)

plot curves (for examples fig)

extract and plot videos

make grid version of figs¶

grid of curves

viz hists

dset sizes

compare outcome defns

00_tab1_data_summary

prepare data

look at different dsets

summarize dsets

01_fit_dnn_best

01_fit_dnn_vary_hyperparams

01_fit_vary_train_size

01_process_train_size_results

02_fig3_all_models_cell_acc

compare all different models across dsets

02_fig3_vary_train_size

compare all different models across dsets

plot accs of models trained on subsamples data

02_fit_all_models_and_eval_dnn

03_fig3_cum_acc_lifetime_acc

prepare data

errs in different regions

acc for different lifetimes

cumulative acc across everything

03_fig3_data_downsampling_accs

prepare data

lower res data (downsample)

look at the downsample acc for the original data

04_fig4_pred_scatter_plots

prepare data

scatter plots

colored scatter plot (deprecated)

05_fig5_interpret_errs

prepare data

viz errs

figure version

kymographs

06_fig6_interpret_interactions

prepare data

segmentation

make simple illustrative plot

recalculate with normalized scores (there is some err here)

interpret one pred at multiple scales