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Integration:  git github
Xiao Li 6d0a9d5c0f
Merge branch 'master' of github.com:csinva/abc-image-understanding
3 years ago
177e1abbb9
update tracking to include stds
3 years ago
91d7290297
train ext buffer, different lifetime threshes
3 years ago
lib
c41f8b5f73
add docs
3 years ago
6a7c55da4c
push models trained with various lifetimes
3 years ago
6d0a9d5c0f
Merge branch 'master' of github.com:csinva/abc-image-understanding
3 years ago
177e1abbb9
update tracking to include stds
3 years ago
src
6d0a9d5c0f
Merge branch 'master' of github.com:csinva/abc-image-understanding
3 years ago
97fad9a70f
add test for pipeline
3 years ago
f25dbfc4bb
load buffers and c in load_tracking
3 years ago
46bb1724b6
Set theme jekyll-theme-cayman
3 years ago
8639e86ef8
move fig nbs to reports folder
3 years ago
eb47d5255e
intro grid figs
3 years ago
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readme.md

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predicting auxilin spikes in clathrin-mediated endocytosis

quickstart for making new predictions

  • our fully trained model is available in the models folder

reproducibility

  • download data: download cached data after tracking from this gdrive folder - should be added to the folder data/tracks
  • process data: run python data.py to properly preprocess all the data (will cache it into the "processed folder")
  • rerun analysis: notebooks folder contains step-by-step analysis
  • tests: run tests with pytest in the tests folder

acknowledgements

Tip!

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About

Predicting successful CME events using only clathrin markers. 🦠📈

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