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Jdbermeo
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
e2f53d16b3
used useful genes identified in another preprocessed pbmc dataset
2 years ago
Jdbermeo closed issue Jdbermeo/ml4g_project_2#2
Imputation: Use SciVI to impute the data2 years ago
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
f864939965
much smaller capacity (h_hidden of 8,16, 32) do not improve too much the performance
2 years ago
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
5dd8449277
control for Disease with much higher capacity network has the same performance
0d5eebd3a5
no batch correction
dda77a7322
control for disease instead
2 years ago
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
85d6821347
most important thing seems to be the number of genes used
2 years ago
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
30c06e028e
better results with fewer genes
2 years ago
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
3e48c87456
first experiment run
2 years ago
Jdbermeo pushed to imputation/scvi at Jdbermeo/ml4g_project_2
0e94acdf22
base imputation pipeline with scvi
54a760476e
added functions to bulkify cell data and get correlation with bulk data
785aec2bb8
Read training data and put it into an AnnData object
c0ea4420dc
added project data
bd86739259
first commit
2 years ago
Jdbermeo created new branch imputation/scvi at Jdbermeo/ml4g_project_2
2 years ago
Jdbermeo closed issue Jdbermeo/ml4g_project_2#6
Write module to produce the aggregaed signal and evalute the correlation with the bulk data2 years ago
Jdbermeo pushed to master at Jdbermeo/ml4g_project_2
54a760476e
added functions to bulkify cell data and get correlation with bulk data
2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#8
Check RaceID1,2,3 and decide if it makes sense to use it for clustering2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#7
Cehck Leiden and implement it for clustering (if it make sense to do so)2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#6
Write module to produce the aggregaed signal and evalute the correlation with the bulk data2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#5
Figure out a sensible train/validation split2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#4
Imputation: Use SAUCIE to impute the data (Higher priority)2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#3
Imputation: Use SAVER/SAVERX to impute the data2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#2
Imputation: Use SciVI to impute the data2 years ago
Jdbermeo opened issue Jdbermeo/ml4g_project_2#1
Imputation: Use Magic to impute the data2 years ago
