UCSC Genome Browser Sequence and Annotations

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/ucsc-genome-browser-dataset")

fs.listdir("s3://genome-browser")

Description:

The UCSC Genome Browser is an online graphical viewer for genomes, a genome browser, hosted by the University of California, Santa Cruz (UCSC). The interactive website offers access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. This dataset is a copy of the MySQL tables in MyISAM binary and tab-sep format and all binary files in custom formats, sometimes referred as 'gbdb'-files. Data from the UCSC Genome Browser is free and open for use by anyone. However, every genome annotation track has been created by an academic research group, or, in a few cases, by commercial companies. Please acknowledge them by citing them. The information can be found by going to https://genome.ucsc.edu, selecting the respective genome assembly and clicking on the data track. At the end of the documentation, we provide a list of references and acknowledgements.

Contact:

The UCSC Genome Browser is an online graphical viewer for genomes, a genome browser, hosted by the University of California, Santa Cruz (UCSC). The interactive website offers access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. This dataset is a copy of the MySQL tables in MyISAM binary and tab-sep format and all binary files in custom formats, sometimes referred as 'gbdb'-files. Data from the UCSC Genome Browser is free and open for use by anyone. However, every genome annotation track has been created by an academic research group, or, in a few cases, by commercial companies. Please acknowledge them by citing them. The information can be found by going to https://genome.ucsc.edu, selecting the respective genome assembly and clicking on the data track. At the end of the documentation, we provide a list of references and acknowledgements.

Update Frequency:

Monthly

Managed By:

University of California Santa Cruz Genome Institute

Resources:

1. resource:
   • Description: https://genome.ucsc.edu/FAQ/FAQformat.html
   • ARN: arn:aws:s3:::genome-browser
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, genetic, genomic, life sciences, bioinformatics, biology