dandiarchive-dataset/s3://dandiarchive/dandisets/001431/draft/dandiset.yaml

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about: []
access:
- schemaKey: AccessRequirements
  status: dandi:OpenAccess
assetsSummary:
  approach:
  - name: electrophysiological approach
    schemaKey: ApproachType
  dataStandard:
  - identifier: RRID:SCR_015242
    name: Neurodata Without Borders (NWB)
    schemaKey: StandardsType
  measurementTechnique:
  - name: spike sorting technique
    schemaKey: MeasurementTechniqueType
  numberOfBytes: 6227009984
  numberOfFiles: 4
  numberOfSubjects: 2
  schemaKey: AssetsSummary
  species:
  - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
    name: Mus musculus - House mouse
    schemaKey: SpeciesType
  variableMeasured:
  - Units
citation: Zhu, Hanlin; He, Fei; Zolotavin, Pavlo; Patel, Saumil; Tolias, Andreas S;
  Luan, Lan; Xie, Chong (2025) A dataset of stimulus evoked spiking timestamps from
  same neurons across multiple days recorded with advanced electrodes (Version draft)
  [Data set]. DANDI Archive. https://dandiarchive.org/dandiset/001431/draft
contributor:
- affiliation: []
  awardNumber: ''
  email: hanlin.zhu@rice.edu
  includeInCitation: true
  name: Zhu, Hanlin
  roleName:
  - dcite:ContactPerson
  schemaKey: Person
- includeInCitation: true
  name: He, Fei
  schemaKey: Person
- includeInCitation: true
  name: Zolotavin, Pavlo
  schemaKey: Person
- includeInCitation: true
  name: Patel, Saumil
  schemaKey: Person
- awardNumber: UF1NS126566
  includeInCitation: true
  name: Tolias, Andreas S
  schemaKey: Person
- awardNumber: R01EY036094; R01NS109361
  includeInCitation: true
  name: Luan, Lan
  schemaKey: Person
- awardNumber: R01NS102917; U01NS115588; R01EY036094
  email: chongxie@rice.edu
  includeInCitation: true
  name: Xie, Chong
  schemaKey: Person
dateCreated: '2025-04-30T20:36:37.975496+00:00'
description: 'Publication: "Temporal coding carries more stable cortical visual representations
  than firing rate over time".The dataset contains spike timestamps (bin number) relative
  to stimulus onset. 4 types of visual stimuli were displayed with 30+ trials each
  day for 15 days. Access variables in the _tsXX.nwb for XX stimuli (dg/sg/rfg/ni)
  with command nwb.units.getRow(XXX) where XXX is the trial number, and the result
  is timestamps of firings in that trial (multiply 0.5 to get unit in ms). To understand
  which neuron, which day, which condition, Nth trial of that condition, get information
  matrix from nwb.acquisition.get(''myMatrix'') and refer to its first 4 rows, respectively.
  The condition order is DG: 0:22.5:337.5 degree; SG: [0:30:150 degree, 0.02cpd],[0:30:150
  degree 0.04cpd] etc; RFG: [horizontal locations left to right , vertical location
  top row],[horizontal locations left to right, vertical location second row from
  top] etc. NI: 100 images not in a particular order.    Access variables in the _tuning.nwb
  with command nwb.acquisition.get(''attendance'') the variables are the following
  1.''attendance'' explains for each 1204 neuron and 15 days, whether that neuron
  was detected/tracked. 2.''highAttendanceUnit'' further shortlists 1037 neurons out
  of the 1204 that appeared for more than 2 days. 3.''notInleast15percentPoorlyTuned''
  further shortlist ~830 neurons out of the 1037 high attendance units that are not
  among the worst 15% in their tuning to natural image stimuli across days. 4-7.''tuned_XX''
  explains for XX stimuli (DG/SG/RFG/NI) whether the firing rate-based tuning to stimuli
  was significant for a given high attendance neuron in any given day. 8.''whichAnimalPerUnit''
  to get the animal from which the unit was recorded from '
ethicsApproval: []
id: DANDI:001431/draft
identifier: DANDI:001431
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://api.dandiarchive.org/api/dandisets/001431/versions/draft/assets/
name: A dataset of stimulus evoked spiking timestamps from same neurons across multiple
  days recorded with advanced electrodes
relatedResource: []
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.9
url: https://dandiarchive.org/dandiset/001431/draft
version: draft
wasGeneratedBy: []