dandiarchive-dataset/s3://dandiarchive/dandisets/001350/0.250511.1527/dandiset.yaml

'@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.9/context.json
about:
- identifier: UBERON:0002336
  name: Corpus Callosum
  schemaKey: Anatomy
access:
- schemaKey: AccessRequirements
  status: dandi:OpenAccess
assetsSummary:
  approach: []
  dataStandard:
  - identifier: RRID:SCR_016124
    name: Brain Imaging Data Structure (BIDS)
    schemaKey: StandardsType
  measurementTechnique: []
  numberOfBytes: 1041046699
  numberOfFiles: 134
  numberOfSamples: 16
  numberOfSubjects: 10
  schemaKey: AssetsSummary
  species: []
  variableMeasured: []
citation: Collin, Armand; Soulaire, Tom; Iram, Tal; Garcia, Miguel; Jorgens, Danielle;
  Guay-Paquet, Mathieu; Cohen-Adad, Julien; Zuchero, J. Bradley (2025) TEM Images
  of Corpus Callosum in Flox/SRF-cKO Mice (Version 0.250511.1527) [Data set]. DANDI
  Archive. https://dandiarchive.org/dandiset/001350/0.250511.1527
contributor:
- identifier: 0009-0005-3258-122X
  includeInCitation: true
  name: Collin, Armand
  roleName:
  - dcite:Author
  - dcite:DataCurator
  - dcite:DataManager
  schemaKey: Person
- includeInCitation: true
  name: Soulaire, Tom
  roleName:
  - dcite:Author
  schemaKey: Person
- identifier: 0000-0002-1606-2009
  includeInCitation: true
  name: Iram, Tal
  roleName:
  - dcite:DataCollector
  - dcite:Researcher
  schemaKey: Person
- identifier: 0000-0003-4181-5372
  includeInCitation: true
  name: Garcia, Miguel
  roleName:
  - dcite:DataCollector
  - dcite:Researcher
  schemaKey: Person
- identifier: 0000-0002-7143-0118
  includeInCitation: true
  name: Jorgens, Danielle
  roleName:
  - dcite:DataCollector
  - dcite:Researcher
  schemaKey: Person
- email: mathieu.guay-paquet@polymtl.ca
  includeInCitation: true
  name: Guay-Paquet, Mathieu
  roleName:
  - dcite:DataCurator
  schemaKey: Person
- email: jcohen@polymtl.ca
  identifier: 0000-0003-3662-9532
  includeInCitation: true
  name: Cohen-Adad, Julien
  roleName:
  - dcite:ContactPerson
  - dcite:Supervision
  schemaKey: Person
- email: bzuchero@stanford.edu
  identifier: 0000-0002-4706-2538
  includeInCitation: true
  name: Zuchero, J. Bradley
  roleName:
  - dcite:Researcher
  - dcite:Supervision
  - dcite:DataCollector
  schemaKey: Person
dateCreated: '2025-02-27T22:42:16.138686+00:00'
datePublished: '2025-05-11T15:27:55.922218+00:00'
description: 'This dataset contains 8000x transmission EM images of the Corpus Callosum
  in two groups of mice. The main goal of this project is to study unmyelinated axons.
  The technique used to prepare the samples is high pressure freezing and freeze substitution.
  This results in high-definition images where unmyelinated axons are remarkably visible.
  Imaging was done at UC Berkeley. This data was originally used in https://www.pnas.org/doi/10.1073/pnas.2307250121.  The
  two mice groups are Wild Type (WT) and SRF conditional knockout (KO). There are
  5 animals per group for a total of 10 and multiple images per mouse.  Original magnification:
  8000x  This dataset includes segmentation masks for the following semantic classes:
  (myelinated) axon, (unmyelinated) axon, myelin, oligodendrocyte nucleus and oligodendrocyte
  processes.     Further details on a deep segmentation model trained on this dataset
  can be found at https://github.com/axondeepseg/model_seg_unmyelinated_tem'
ethicsApproval: []
id: DANDI:001350/0.250511.1527
identifier: DANDI:001350
keywords:
- TEM
- Electron Microscopy
- Histology
- CNS
- SRF
- axon
- myelin
- segmentation
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://dandiarchive.s3.amazonaws.com/dandisets/001350/0.250511.1527/assets.yaml
name: TEM Images of Corpus Callosum in Flox/SRF-cKO Mice
publishedBy:
  endDate: '2025-05-11T15:27:55.922218+00:00'
  id: urn:uuid:a9a8770c-c46c-43c7-b2eb-00ab0e4e9192
  name: DANDI publish
  schemaKey: PublishActivity
  startDate: '2025-05-11T15:27:55.922218+00:00'
  wasAssociatedWith:
  - id: urn:uuid:53b74581-0ccb-4088-895f-7e0955d54a36
    identifier: RRID:SCR_017571
    name: DANDI API
    schemaKey: Software
    version: 0.1.0
relatedResource: []
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.9
studyTarget:
- Role of SRF transcription factor in CNS myelination
url: https://dandiarchive.org/dandiset/001350/0.250511.1527
version: 0.250511.1527
wasGeneratedBy: []