dandiarchive-dataset/s3://dandiarchive/dandisets/000728/0.240827.1809/dandiset.jsonld

{"id":"DANDI:000728/0.240827.1809","url":"https://dandiarchive.org/dandiset/000728/0.240827.1809","name":"Allen Institute - Visual Coding - Optical Physiology","about":[],"access":[{"status":"dandi:OpenAccess","schemaKey":"AccessRequirements"}],"license":["spdx:CC-BY-4.0"],"version":"0.240827.1809","@context":"https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.4/context.json","citation":"Allen Institute (2024) Allen Institute - Visual Coding - Optical Physiology (Version 0.240827.1809) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000728/0.240827.1809","keywords":[],"protocol":[],"schemaKey":"Dandiset","identifier":"DANDI:000728","repository":"https://dandiarchive.org","contributor":[{"name":"Baker, Cody","email":"cody.c.baker.phd@gmail.com","roleName":["dcite:DataCurator"],"schemaKey":"Person","affiliation":[],"includeInCitation":false},{"url":"https://alleninstitute.org/","name":"Allen Institute","email":"info@alleninstitute.org","roleName":["dcite:Funder","dcite:ContactPerson"],"schemaKey":"Organization","identifier":"https://ror.org/03cpe7c52","includeInCitation":true}],"dateCreated":"2023-12-11T05:09:39.457563+00:00","description":"From the Allen Institute Brain Observatory, the Visual Coding (optical physiology) dataset is a large-scale, standardized survey of physiological activity across the mouse visual cortex, hippocampus, and thalamus. This two-photon imaging dataset features visually evoked calcium responses from GCaMP6-expressing neurons in a range of cortical layers, visual areas, and Cre lines. We hope that experimentalists and modelers will use these comprehensive, open datasets as a testbed for theories of visual information processing.\n\nFull documentation of the Visual Coding Ophys dataset and tutorials can be found here: https://observatory.brain-map.org/visualcoding/\n\nThe Visual Coding Ecephys (NeuroPixels) dataset can be found here: https://dandiarchive.org/dandiset/000021\n\n","publishedBy":{"id":"urn:uuid:b5178ec3-dce6-42cf-8f89-e02f9c6869a7","name":"DANDI publish","endDate":"2024-08-27T18:09:04.150074+00:00","schemaKey":"PublishActivity","startDate":"2024-08-27T18:09:04.150074+00:00","wasAssociatedWith":[{"id":"urn:uuid:8ee522b3-6cdf-4ebc-8d7c-7b200e3adf87","name":"DANDI API","version":"0.1.0","schemaKey":"Software","identifier":"RRID:SCR_017571"}]},"studyTarget":[],"assetsSummary":{"species":[{"name":"Mus musculus - House mouse","schemaKey":"SpeciesType","identifier":"http://purl.obolibrary.org/obo/NCBITaxon_10090"}],"approach":[{"name":"microscopy approach; cell population imaging","schemaKey":"ApproachType"},{"name":"behavioral approach","schemaKey":"ApproachType"}],"schemaKey":"AssetsSummary","dataStandard":[{"name":"Neurodata Without Borders (NWB)","schemaKey":"StandardsType","identifier":"RRID:SCR_015242"}],"numberOfBytes":62484268521319,"numberOfFiles":3036,"numberOfSubjects":271,"variableMeasured":["OpticalChannel","TwoPhotonSeries","ImagingPlane","PlaneSegmentation","ProcessingModule","BehavioralTimeSeries","SpatialSeries","CompassDirection","PupilTracking","EyeTracking"],"measurementTechnique":[{"name":"surgical technique","schemaKey":"MeasurementTechniqueType"},{"name":"two-photon microscopy technique","schemaKey":"MeasurementTechniqueType"},{"name":"analytical technique","schemaKey":"MeasurementTechniqueType"},{"name":"behavioral technique","schemaKey":"MeasurementTechniqueType"}]},"datePublished":"2024-08-27T18:09:04.150074+00:00","schemaVersion":"0.6.4","ethicsApproval":[],"wasGeneratedBy":[],"relatedResource":[{"url":"https://github.com/dandi/example-notebooks/tree/master/000728/AllenInstitute","name":"Example Notebook","relation":"dcite:IsSupplementTo","schemaKey":"Resource","identifier":"7c4a0ddf6a0af514cfb9794958b7d15cebaeecbc","repository":"dandi/example-notebooks","resourceType":"dcite:ComputationalNotebook"},{"url":"https://github.com/catalystneuro/visual-coding-to-nwb-v2","name":"Conversion Software","relation":"dcite:IsSourceOf","schemaKey":"Resource","identifier":"3c42c5225c156b59e20d549d4889be7e7ebb8209","repository":"catalystneuro/visual-coding-to-nwb-v2","resourceType":"dcite:Software"}],"manifestLocation":["https://dandiarchive.s3.amazonaws.com/dandisets/000728/0.240827.1809/assets.yaml"]}