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DagsHub-Datasets
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dandiarchive-dataset

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dandiset.yaml 4.2 KB
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  1. '@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.4/context.json
    2. 

  2. about:
    3. 

  3. - name: C. elegans whole-brain
    4. 

  4.   schemaKey: Anatomy
    5. 

  5. access:
    6. 

  6. - schemaKey: AccessRequirements
    7. 

  7.   status: dandi:OpenAccess
    8. 

  8. assetsSummary:
    9. 

  9.   approach:
    10. 

  10.   - name: microscopy approach; cell population imaging
    11. 

  11.     schemaKey: ApproachType
    12. 

  12.   dataStandard:
    13. 

  13.   - identifier: RRID:SCR_015242
    14. 

  14.     name: Neurodata Without Borders (NWB)
    15. 

  15.     schemaKey: StandardsType
    16. 

  16.   measurementTechnique:
    17. 

  17.   - name: analytical technique
    18. 

  18.     schemaKey: MeasurementTechniqueType
    19. 

  19.   numberOfBytes: 478075700
    20. 

  20.   numberOfFiles: 9
    21. 

  21.   numberOfSubjects: 9
    22. 

  22.   schemaKey: AssetsSummary
    23. 

  23.   species:
    24. 

  24.   - identifier: http://purl.obolibrary.org/obo/NCBITaxon_6239
    25. 

  25.     name: Caenorhabditis elegans
    26. 

  26.     schemaKey: SpeciesType
    27. 

  27.   variableMeasured:
    28. 

  28.   - ProcessingModule
    29. 

  29.   - PlaneSegmentation
    30. 

  30. citation: Sprague, Daniel; Chaudhary, Shivesh; Lee, Sol Ah; Li, Yueyi; Patel, Dhaval
    31. 

  31.   S; Lu, Hang (2024) Segmented and labeled NeuroPAL structural images (Version 0.240611.1954)
    32. 

  32.   [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000714/0.240611.1954
    33. 

  33. contributor:
    34. 

  34. - affiliation: []
    35. 

  35.   email: daniel.y.sprague@gmail.com
    36. 

  36.   includeInCitation: true
    37. 

  37.   name: Sprague, Daniel
    38. 

  38.   roleName:
    39. 

  39.   - dcite:ContactPerson
    40. 

  40.   schemaKey: Person
    41. 

  41. - affiliation:
    42. 

  42.   - name: School of Chemical & Biomolecular Engineering, Georgia Institute of Technology,
    43. 

  43.       Atlanta, United States
    44. 

  44.     schemaKey: Affiliation
    45. 

  45.   email: shiveshc@gmail.com
    46. 

  46.   includeInCitation: true
    47. 

  47.   name: Chaudhary, Shivesh
    48. 

  48.   roleName:
    49. 

  49.   - dcite:Author
    50. 

  50.   - dcite:ContactPerson
    51. 

  51.   - dcite:DataCollector
    52. 

  52.   - dcite:Conceptualization
    53. 

  53.   - dcite:FormalAnalysis
    54. 

  54.   - dcite:Investigation
    55. 

  55.   - dcite:Methodology
    56. 

  56.   - dcite:Validation
    57. 

  57.   - dcite:Software
    58. 

  58.   schemaKey: Person
    59. 

  59. - affiliation:
    60. 

  60.   - name: School of Chemical & Biomolecular Engineering, Georgia Institute of Technology,
    61. 

  61.       Atlanta, United States
    62. 

  62.     schemaKey: Affiliation
    63. 

  63.   includeInCitation: true
    64. 

  64.   name: Lee, Sol Ah
    65. 

  65.   roleName:
    66. 

  66.   - dcite:Investigation
    67. 

  67.   schemaKey: Person
    68. 

  68. - affiliation:
    69. 

  69.   - name: School of Chemical & Biomolecular Engineering, Georgia Institute of Technology,
    70. 

  70.       Atlanta, United States
    71. 

  71.     schemaKey: Affiliation
    72. 

  72.   includeInCitation: true
    73. 

  73.   name: Li, Yueyi
    74. 

  74.   roleName:
    75. 

  75.   - dcite:Investigation
    76. 

  76.   schemaKey: Person
    77. 

  77. - affiliation:
    78. 

  78.   - name: School of Chemical & Biomolecular Engineering, Georgia Institute of Technology,
    79. 

  79.       Atlanta, United States
    80. 

  80.     schemaKey: Affiliation
    81. 

  81.   includeInCitation: true
    82. 

  82.   name: Patel, Dhaval S
    83. 

  83.   roleName:
    84. 

  84.   - dcite:Methodology
    85. 

  85.   schemaKey: Person
    86. 

  86. - affiliation:
    87. 

  87.   - name: School of Chemical & Biomolecular Engineering, Georgia Institute of Technology,
    88. 

  88.       Atlanta, United States
    89. 

  89.     schemaKey: Affiliation
    90. 

  90.   includeInCitation: true
    91. 

  91.   name: Lu, Hang
    92. 

  92.   roleName:
    93. 

  93.   - dcite:Conceptualization
    94. 

  94.   - dcite:FormalAnalysis
    95. 

  95.   - dcite:Investigation
    96. 

  96.   - dcite:Methodology
    97. 

  97.   - dcite:ProjectAdministration
    98. 

  98.   - dcite:Visualization
    99. 

  99.   schemaKey: Person
    100. 

  100. dateCreated: '2023-11-20T21:32:21.225581+00:00'
    101. 

  101. datePublished: '2024-06-11T19:54:24.167389+00:00'
    102. 

  102. description: Segmented and labeled NeuroPAL datasets from "Graphical-model framework
    103. 

  103.   for automated annotation of cell identities in dense cellular images" by Shivesh
    104. 

  104.   Chaudhary, et al.
    105. 

  105. ethicsApproval: []
    106. 

  106. id: DANDI:000714/0.240611.1954
    107. 

  107. identifier: DANDI:000714
    108. 

  108. keywords: []
    109. 

  109. license:
    110. 

  110. - spdx:CC-BY-4.0
    111. 

  111. manifestLocation:
    112. 

  112. - https://dandiarchive.s3.amazonaws.com/dandisets/000714/0.240611.1954/assets.yaml
    113. 

  113. name: Segmented and labeled NeuroPAL structural images
    114. 

  114. protocol: []
    115. 

  115. publishedBy:
    116. 

  116.   endDate: '2024-06-11T19:54:24.167389+00:00'
    117. 

  117.   id: urn:uuid:633359ed-7cf6-46e8-ada9-1621060d51bf
    118. 

  118.   name: DANDI publish
    119. 

  119.   schemaKey: PublishActivity
    120. 

  120.   startDate: '2024-06-11T19:54:24.167389+00:00'
    121. 

  121.   wasAssociatedWith:
    122. 

  122.   - id: urn:uuid:bfe421e0-76c0-4413-bd95-c26b283b2a79
    123. 

  123.     identifier: RRID:SCR_017571
    124. 

  124.     name: DANDI API
    125. 

  125.     schemaKey: Software
    126. 

  126.     version: 0.1.0
    127. 

  127. relatedResource:
    128. 

  128. - name: Conditional Random Field Graphical Model for Annotation of C. elegans whole-brain
    129. 

  129.     images
    130. 

  130.   relation: dcite:IsSupplementTo
    131. 

  131.   repository: CRF_Cell_ID
    132. 

  132.   schemaKey: Resource
    133. 

  133.   url: https://github.com/shiveshc/CRF_Cell_ID
    134. 

  134. repository: https://dandiarchive.org
    135. 

  135. schemaKey: Dandiset
    136. 

  136. schemaVersion: 0.6.4
    137. 

  137. studyTarget: []
    138. 

  138. url: https://dandiarchive.org/dandiset/000714/0.240611.1954
    139. 

  139. version: 0.240611.1954
    140. 

  140. wasGeneratedBy: []
    141.
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