dandiarchive-dataset/s3://dandiarchive/dandisets/000711/0.231121.1730/dandiset.yaml

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about: []
access:
- schemaKey: AccessRequirements
  status: dandi:OpenAccess
assetsSummary:
  approach:
  - name: microscopy approach; cell population imaging
    schemaKey: ApproachType
  dataStandard:
  - identifier: RRID:SCR_015242
    name: Neurodata Without Borders (NWB)
    schemaKey: StandardsType
  measurementTechnique:
  - name: analytical technique
    schemaKey: MeasurementTechniqueType
  - name: surgical technique
    schemaKey: MeasurementTechniqueType
  numberOfBytes: 1508058148534
  numberOfFiles: 6015
  numberOfSubjects: 107
  schemaKey: AssetsSummary
  species:
  - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
    name: Mus musculus - House mouse
    schemaKey: SpeciesType
  variableMeasured:
  - ProcessingModule
  - ImagingPlane
  - PlaneSegmentation
  - OpticalChannel
citation: Allen Institute for Brain Science; Olsen, Shawn; Garrett, Marina; Groblewski,
  Peter (2023) Allen Institute - Visual Behavior - Optical Physiology (Version 0.231121.1730)
  [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000711/0.231121.1730
contributor:
- contactPoint: []
  identifier: https://ror.org/00dcv1019
  includeInCitation: true
  name: Allen Institute for Brain Science
  roleName:
  - dcite:Funder
  schemaKey: Organization
  url: http://alleninstitute.org/
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: shawno@alleninstitute.org
  identifier: 0000-0002-9568-7057
  includeInCitation: true
  name: Olsen, Shawn
  roleName:
  - dcite:Conceptualization
  - dcite:ProjectLeader
  - dcite:Supervision
  - dcite:Resources
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: chris.morrison@alleninstitute.org
  identifier: 0000-0001-9419-3947
  includeInCitation: false
  name: Morrison, Christopher
  roleName:
  - dcite:DataCurator
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: marinag@alleninstitute.org
  identifier: 0000-0002-5271-2291
  includeInCitation: true
  name: Garrett, Marina
  roleName:
  - dcite:Conceptualization
  - dcite:ProjectLeader
  - dcite:Validation
  - dcite:DataCurator
  - dcite:ContactPerson
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: peterg@alleninstitute.org
  identifier: 0000-0002-6529-1414
  includeInCitation: true
  name: Groblewski, Peter
  roleName:
  - dcite:Conceptualization
  - dcite:ProjectLeader
  - dcite:Supervision
  - dcite:ProjectAdministration
  schemaKey: Person
dateCreated: '2023-11-14T17:08:29.884713+00:00'
datePublished: '2023-11-21T17:30:05.290058+00:00'
description: "The Visual Behavior Ophys dataset was generated using in vivo 2-photon
  calcium imaging (also called optical physiology, or “ophys”) to measure the activity
  of genetically identified neurons in the visual cortex of mice performing a go/no-go
  visual change detection task. Population of neurons were recorded over multiple
  days with varying sensory and behavioral contexts, including familiar and novel
  stimuli, and passive exposure sessions. This dataset can be used to evaluate the
  influence of experience, expectation, and task engagement on neural coding and dynamics
  in excitatory, Vip inhibitory, and Sst inhibitory cell populations. \n\nThe full
  ophys dataset includes neural and behavioral measurements from 107 well-trained
  mice during 703 in vivo 2-photon imaging sessions from 326 unique fields of view,
  resulting in a total of 50,476 cortical neurons recorded. The full behavioral training
  history of all imaged mice is also provided as part of the dataset, allowing investigation
  into task learning, behavioral strategy, and inter-animal variability. There are
  a total of 4,782 behavior sessions available for analysis.\n\nFull documentation
  of the Visual Behavior Ophys dataset and tutorials can be found here: https://allensdk.readthedocs.io/en/latest/visual_behavior_optical_physiology.html\n\nThe
  recommended route for interacting with these data is through the AllenSDK (https://github.com/AllenInstitute/AllenSDK/)
  which provides methods for downloading and processing data. Documentation of the
  AllenSDK can be found here: https://allensdk.readthedocs.io/en/latest/. \n\nThere
  are several metadata summary tables that are available as \"related resources\"
  associated with this DANDI-set. You can also use the AllenSDK to download these
  tables. See this notebook (https://allensdk.readthedocs.io/en/latest/_static/examples/nb/visual_behavior_ophys_data_access.html)
  for information on downloading the metadata and the associated NWB files.\n\nPublicly
  available pre-prints using this dataset include: \n\nStimulus novelty uncovers coding
  diversity in visual cortical circuits\nhttps://doi.org/10.1101/2023.02.14.528085
  \n\nBehavioral strategy shapes activation of the Vip-Sst disinhibitory circuit in
  visual cortex\nhttps://doi.org/10.1101/2023.04.28.538575 \n\nFamiliarity modulated
  synapses model visual cortical circuit novelty responses\nhttps://doi.org/10.1101/2023.08.16.553635 "
ethicsApproval: []
id: DANDI:000711/0.231121.1730
identifier: DANDI:000711
keywords:
- mouse
- visual cortex
- 2-photon microscopy
- calcium imaging
- excitatory neurons
- inhibitory neurons
- novelty
- task engagement
- behavior
- learning
- change detection
- 'disinhibition '
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://dandiarchive.s3.amazonaws.com/dandisets/000711/0.231121.1730/assets.yaml
name: Allen Institute - Visual Behavior - Optical Physiology
protocol: []
publishedBy:
  endDate: '2023-11-21T17:30:05.290058+00:00'
  id: urn:uuid:e528945f-8172-4c62-baa9-02faae462c49
  name: DANDI publish
  schemaKey: PublishActivity
  startDate: '2023-11-21T17:30:05.290058+00:00'
  wasAssociatedWith:
  - id: urn:uuid:a2de9173-ca0f-4f60-b3a9-e3a633b330bd
    identifier: RRID:SCR_017571
    name: DANDI API
    schemaKey: Software
    version: 0.1.0
relatedResource:
- name: Ophys Sessions Metadata Table
  relation: dcite:IsMetadataFor
  schemaKey: Resource
  url: https://visual-behavior-ophys-data.s3.us-west-2.amazonaws.com/visual-behavior-ophys/project_metadata/ophys_session_table.csv
- identifier: ''
  name: Behavior Sessions Metadata Table
  relation: dcite:IsMetadataFor
  schemaKey: Resource
  url: https://visual-behavior-ophys-data.s3.us-west-2.amazonaws.com/visual-behavior-ophys/project_metadata/behavior_session_table.csv
- name: Ophys Experiments Metadata Table
  relation: dcite:IsMetadataFor
  schemaKey: Resource
  url: https://visual-behavior-ophys-data.s3.us-west-2.amazonaws.com/visual-behavior-ophys/project_metadata/ophys_experiment_table.csv
- name: Ophys Cells Table
  relation: dcite:IsMetadataFor
  schemaKey: Resource
  url: https://visual-behavior-ophys-data.s3.us-west-2.amazonaws.com/visual-behavior-ophys/project_metadata/ophys_cells_table.csv
- name: Natural Movie One
  relation: dcite:IsMetadataFor
  schemaKey: Resource
  url: https://visual-behavior-ophys-data.s3.us-west-2.amazonaws.com/visual-behavior-ophys/resources/Movie_TOE1.npy
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.4
studyTarget:
- This dataset can be used to evaluate the influence of experience, expectation, and
  task engagement on neural coding and dynamics in excitatory and inhibitory cell
  populations.
url: https://dandiarchive.org/dandiset/000711/0.231121.1730
version: 0.231121.1730
wasGeneratedBy: []