dandiarchive-dataset/s3://dandiarchive/dandisets/000458/0.230317.0039/dandiset.yaml

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  status: dandi:OpenAccess
assetsSummary:
  approach:
  - name: electrophysiological approach
    schemaKey: ApproachType
  - name: behavioral approach
    schemaKey: ApproachType
  dataStandard:
  - identifier: RRID:SCR_015242
    name: Neurodata Without Borders (NWB)
    schemaKey: StandardsType
  measurementTechnique:
  - name: surgical technique
    schemaKey: MeasurementTechniqueType
  - name: spike sorting technique
    schemaKey: MeasurementTechniqueType
  - name: behavioral technique
    schemaKey: MeasurementTechniqueType
  - name: analytical technique
    schemaKey: MeasurementTechniqueType
  - name: signal filtering technique
    schemaKey: MeasurementTechniqueType
  - name: multi electrode extracellular electrophysiology recording technique
    schemaKey: MeasurementTechniqueType
  numberOfBytes: 361482309556
  numberOfFiles: 24
  numberOfSubjects: 23
  schemaKey: AssetsSummary
  species:
  - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
    name: Mus musculus - House mouse
    schemaKey: SpeciesType
  variableMeasured:
  - BehavioralTimeSeries
  - Units
  - ElectricalSeries
  - ElectrodeGroup
  - LFP
  - ProcessingModule
citation: Claar, Leslie D; Rembado, Irene; Kuyat, Jacqulyn R; Russo, Simone; Marks,
  Lydia C; Olsen, Shawn R; Koch, Christof (2023) Simultaneous electroencephalography,
  extracellular electrophysiology, and cortical electrical stimulation in head-fixed
  mice (Version 0.230317.0039) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000458/0.230317.0039
contributor:
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: lesliec@alleninstitute.org
  identifier: 0000-0002-4030-9171
  includeInCitation: true
  name: Claar, Leslie D
  roleName:
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  - dcite:Author
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- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: irene.rembado@alleninstitute.org
  includeInCitation: true
  name: Rembado, Irene
  roleName:
  - dcite:Author
  - dcite:ContactPerson
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  includeInCitation: true
  name: Kuyat, Jacqulyn R
  roleName:
  - dcite:Author
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  includeInCitation: true
  name: Russo, Simone
  roleName:
  - dcite:Author
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  includeInCitation: true
  name: Marks, Lydia C
  roleName:
  - dcite:Author
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  includeInCitation: true
  name: Olsen, Shawn R
  roleName:
  - dcite:Author
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  includeInCitation: true
  name: Koch, Christof
  roleName:
  - dcite:Author
  schemaKey: Person
- contactPoint: []
  includeInCitation: false
  name: Tiny Blue Dot Foundation
  roleName:
  - dcite:Funder
  schemaKey: Organization
  url: https://www.tinybluedotfoundation.org/
- contactPoint:
  - schemaKey: ContactPoint
  identifier: https://ror.org/03cpe7c52
  includeInCitation: false
  name: Allen Institute
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  schemaKey: Organization
  url: https://alleninstitute.org/
dateCreated: '2023-03-16T16:02:14.771820+00:00'
datePublished: '2023-03-17T00:39:49.682458+00:00'
description: 'In this set of experiments, we recorded neural signals using an electroencephalography
  (EEG) array and Neuropixels probes while directly electrically stimulating the cortex
  in awake and anesthetized head-fixed mice. Details of the experiments can be found
  in the associated manuscript (Claar, Rembado et al., 2023). Briefly, the recordings
  and stimulation commenced while the mouse was awake, free to rest or move on a rotating
  disc. After delivering a series of stimuli, anesthesia was induced with isoflurane
  (5% via inhalation). Once a surgical level of anesthesia was reached, the mouse
  was maintained unconscious (1-1.5% isoflurane) during the delivery of another series
  of stimuli. In some subjects another series of stimuli was delivered after the isoflurane
  was turned off, this epoch/state is referred to as “recovery” in the dataset.


  Each session file includes the following data: raw EEG signals from all 30 surface
  electrodes and the associated electrode information; raw LFP signals from all electrodes
  on all Neuropixels probes (if used) and the associated electrode information; spike
  times for all units (spike sorted with Kilosort 2.0) that passed our quality threshold
  with associated information (brain region, spike waveform duration, etc.); subject’s
  speed computed from the rotation of the disc for the entire session; epochs marking
  when isoflurane was induced and when it was maintained; and a trial table containing
  information about every stimulus delivered throughout the session.


  All sessions included an awake and an isoflurane epoch, but not all sessions included
  a recovery epoch. Some subjects received visual stimulation trials (visual stimuli
  presented on a screen in the subject’s right field of view) interleaved with the
  electrical stimulation trials.'
ethicsApproval: []
id: DANDI:000458/0.230317.0039
identifier: DANDI:000458
keywords:
- EEG
- Neuropixels
- electrical stimulation
- brain states
- cortico-thalamic interactions
- extracellular electrophysiology
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://dandiarchive.s3.amazonaws.com/dandisets/000458/0.230317.0039/assets.yaml
name: Simultaneous electroencephalography, extracellular electrophysiology, and cortical
  electrical stimulation in head-fixed mice
protocol: []
publishedBy:
  endDate: '2023-03-17T00:39:49.682458+00:00'
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  startDate: '2023-03-17T00:39:49.682458+00:00'
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    identifier: RRID:SCR_017571
    name: DANDI API
    schemaKey: Software
    version: 0.1.0
relatedResource:
- identifier: Reviewed preprint (eLife)
  name: Cortico-thalamo-cortical interactions modulate electrically evoked EEG responses
    in mice
  relation: dcite:IsDescribedBy
  repository: eLife
  schemaKey: Resource
  url: https://elifesciences.org/reviewed-preprints/84630
- identifier: Manuscript preprint (bioRxiv)
  name: Cortico-thalamo-cortical interactions modulate electrically evoked EEG responses
    in mice
  relation: dcite:IsDescribedBy
  repository: bioRxiv
  schemaKey: Resource
  url: https://www.biorxiv.org/content/10.1101/2022.07.22.501195v3
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.4
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url: https://dandiarchive.org/dandiset/000458/0.230317.0039
version: 0.230317.0039
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