Register
Login
Resources
Docs Blog Datasets Glossary Case Studies Tutorials & Webinars
Product
Data Engine LLMs Platform Enterprise
Pricing Explore
Connect to our Discord channel

dandiset.yaml 5.0 KB
Raw

You have to be logged in to leave a comment. Sign In
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
  1. '@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.6/context.json
  2. about: []
  3. access:
  4. - schemaKey: AccessRequirements
  5. status: dandi:OpenAccess
  6. assetsSummary:
  7. approach:
  8. - name: microscopy approach; cell population imaging
  9. schemaKey: ApproachType
  10. - name: electrophysiological approach
  11. schemaKey: ApproachType
  12. dataStandard:
  13. - identifier: RRID:SCR_015242
  14. name: Neurodata Without Borders (NWB)
  15. schemaKey: StandardsType
  16. measurementTechnique:
  17. - name: multi electrode extracellular electrophysiology recording technique
  18. schemaKey: MeasurementTechniqueType
  19. - name: surgical technique
  20. schemaKey: MeasurementTechniqueType
  21. numberOfBytes: 49105883680
  22. numberOfFiles: 6
  23. numberOfSubjects: 6
  24. schemaKey: AssetsSummary
  25. species:
  26. - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
  27. name: Mus musculus - House mouse
  28. schemaKey: SpeciesType
  29. variableMeasured:
  30. - ElectrodeGroup
  31. - ElectricalSeries
  32. - OpticalChannel
  33. - ImagingPlane
  34. citation: 'Prakash, Mansi; Murphy, Jeremy; Friedman, Nina; Pal, Akash; Bhagat, Yuvraj;
  35. Shaner, Nathan C.; Lipscombe, Diane; Hochgeschwender, Ute; Moore, Christopher I.;
  36. Crespo, Emmanuel L. (2024) Interluminescence: Selective Control of Synaptically-Connected
  37. Circuit Elements using bioluminescence (Version 0.240319.2026) [Data set]. DANDI
  38. archive. https://dandiarchive.org/dandiset/000935/0.240319.2026'
  39. contributor:
  40. - awardNumber: 1 R01 NS 120832-21
  41. name: National Institutes of Health (NIH)
  42. roleName:
  43. - dcite:Funder
  44. schemaKey: Organization
  45. - includeInCitation: true
  46. name: Prakash, Mansi
  47. roleName:
  48. - dcite:Researcher
  49. schemaKey: Person
  50. - includeInCitation: true
  51. name: Murphy, Jeremy
  52. roleName:
  53. - dcite:Researcher
  54. schemaKey: Person
  55. - includeInCitation: true
  56. name: Friedman, Nina
  57. schemaKey: Person
  58. - includeInCitation: false
  59. name: St Laurent, Robyn
  60. schemaKey: Person
  61. - includeInCitation: false
  62. name: Bjorefeldt, Andreas
  63. schemaKey: Person
  64. - includeInCitation: true
  65. name: Pal, Akash
  66. schemaKey: Person
  67. - includeInCitation: true
  68. name: Bhagat, Yuvraj
  69. schemaKey: Person
  70. - includeInCitation: false
  71. name: Kauer, Julie A.
  72. schemaKey: Person
  73. - includeInCitation: true
  74. name: Shaner, Nathan C.
  75. schemaKey: Person
  76. - includeInCitation: true
  77. name: Lipscombe, Diane
  78. schemaKey: Person
  79. - email: hochg1u@cmich.edu
  80. includeInCitation: true
  81. name: Hochgeschwender, Ute
  82. roleName:
  83. - dcite:ContactPerson
  84. - dcite:ProjectLeader
  85. schemaKey: Person
  86. - email: christopher_moore@brown.edu
  87. includeInCitation: true
  88. name: Moore, Christopher I.
  89. roleName:
  90. - dcite:ProjectLeader
  91. - dcite:ContactPerson
  92. schemaKey: Person
  93. - includeInCitation: true
  94. name: Crespo, Emmanuel L.
  95. schemaKey: Person
  96. dateCreated: '2024-03-06T16:20:51.867802+00:00'
  97. datePublished: '2024-03-19T20:26:03.532850+00:00'
  98. description: 'This is the repository for in vivo extracellular electrophysiology testing
  99. a bioluminescent-optogenetic synaptic element. In this experiment (see doi: 10.1038/s42003-021-02981-7),
  100. extracellular electrophysiology data and 1-photon bioluminescent imaging data were
  101. recorded from six PV-Cre mice under isoflurane anesthesia. There are two groups
  102. (Opsin(+) and Opsin(-), see session description and doi: 10.1038/s42003-021-02981-7
  103. for details) of 3 animals each. For all animals a baseline of ~3 minutes of data
  104. was recorded, after which the bioluminescent luciferin Coelenterazine was infused
  105. into a saline well over an open craniotomy exposing barrel cortex. Time Intervals
  106. in the data set designate the start and stop times of Coelenterazine infusion in
  107. seconds.'
  108. ethicsApproval:
  109. - contactPoint:
  110. email: IACUC@brown.edu
  111. schemaKey: ContactPoint
  112. url: https://www.brown.edu/research/conducting-research-brown/research-compliance-irb-iacuc-coi-export-control-research-data-management-and-data-use-agreements/institutional-animal-care-and-use-committee-iacuc
  113. identifier: 20-09-0003
  114. schemaKey: EthicsApproval
  115. id: DANDI:000935/0.240319.2026
  116. identifier: DANDI:000935
  117. keywords:
  118. - Bioluminescence
  119. - Luminopsins
  120. - Parvalbumin
  121. - gamma rhythms
  122. license:
  123. - spdx:CC-BY-4.0
  124. manifestLocation:
  125. - https://dandiarchive.s3.amazonaws.com/dandisets/000935/0.240319.2026/assets.yaml
  126. name: 'Interluminescence: Selective Control of Synaptically-Connected Circuit Elements
  127. using bioluminescence'
  128. protocol:
  129. - https://doi.org/10.1038/s42003-021-02981-7
  130. publishedBy:
  131. endDate: '2024-03-19T20:26:03.532850+00:00'
  132. id: urn:uuid:0ff8ef39-27b9-44ef-8b11-8f880dc7a391
  133. name: DANDI publish
  134. schemaKey: PublishActivity
  135. startDate: '2024-03-19T20:26:03.532850+00:00'
  136. wasAssociatedWith:
  137. - id: urn:uuid:c070c792-6f1d-4c57-8589-eb822eda6381
  138. identifier: RRID:SCR_017571
  139. name: DANDI API
  140. schemaKey: Software
  141. version: 0.1.0
  142. relatedResource: []
  143. repository: https://dandiarchive.org
  144. schemaKey: Dandiset
  145. schemaVersion: 0.6.6
  146. studyTarget:
  147. - Test the efficacy of a bioluminescent-optogenetic synaptic construct in vivo
  148. url: https://dandiarchive.org/dandiset/000935/0.240319.2026
  149. version: 0.240319.2026
  150. wasGeneratedBy: []
Tip!

Press p or to see the previous file or, n or to see the next file

Comments

Loading...