dandiarchive-dataset/s3://dandiarchive/dandisets/000728/0.240827.1809/dandiset.yaml

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assetsSummary:
  approach:
  - name: microscopy approach; cell population imaging
    schemaKey: ApproachType
  - name: behavioral approach
    schemaKey: ApproachType
  dataStandard:
  - identifier: RRID:SCR_015242
    name: Neurodata Without Borders (NWB)
    schemaKey: StandardsType
  measurementTechnique:
  - name: surgical technique
    schemaKey: MeasurementTechniqueType
  - name: two-photon microscopy technique
    schemaKey: MeasurementTechniqueType
  - name: analytical technique
    schemaKey: MeasurementTechniqueType
  - name: behavioral technique
    schemaKey: MeasurementTechniqueType
  numberOfBytes: 62484268521319
  numberOfFiles: 3036
  numberOfSubjects: 271
  schemaKey: AssetsSummary
  species:
  - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
    name: Mus musculus - House mouse
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  variableMeasured:
  - OpticalChannel
  - TwoPhotonSeries
  - ImagingPlane
  - PlaneSegmentation
  - ProcessingModule
  - BehavioralTimeSeries
  - SpatialSeries
  - CompassDirection
  - PupilTracking
  - EyeTracking
citation: Allen Institute (2024) Allen Institute - Visual Coding - Optical Physiology
  (Version 0.240827.1809) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000728/0.240827.1809
contributor:
- affiliation: []
  email: cody.c.baker.phd@gmail.com
  includeInCitation: false
  name: Baker, Cody
  roleName:
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- email: info@alleninstitute.org
  identifier: https://ror.org/03cpe7c52
  includeInCitation: true
  name: Allen Institute
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  url: https://alleninstitute.org/
dateCreated: '2023-12-11T05:09:39.457563+00:00'
datePublished: '2024-08-27T18:09:04.150074+00:00'
description: 'From the Allen Institute Brain Observatory, the Visual Coding (optical
  physiology) dataset is a large-scale, standardized survey of physiological activity
  across the mouse visual cortex, hippocampus, and thalamus. This two-photon imaging
  dataset features visually evoked calcium responses from GCaMP6-expressing neurons
  in a range of cortical layers, visual areas, and Cre lines. We hope that experimentalists
  and modelers will use these comprehensive, open datasets as a testbed for theories
  of visual information processing.


  Full documentation of the Visual Coding Ophys dataset and tutorials can be found
  here: https://observatory.brain-map.org/visualcoding/


  The Visual Coding Ecephys (NeuroPixels) dataset can be found here: https://dandiarchive.org/dandiset/000021


  '
ethicsApproval: []
id: DANDI:000728/0.240827.1809
identifier: DANDI:000728
keywords: []
license:
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manifestLocation:
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name: Allen Institute - Visual Coding - Optical Physiology
protocol: []
publishedBy:
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  startDate: '2024-08-27T18:09:04.150074+00:00'
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    version: 0.1.0
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  url: https://github.com/dandi/example-notebooks/tree/master/000728/AllenInstitute
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  name: Conversion Software
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  repository: catalystneuro/visual-coding-to-nwb-v2
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  url: https://github.com/catalystneuro/visual-coding-to-nwb-v2
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.4
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url: https://dandiarchive.org/dandiset/000728/0.240827.1809
version: 0.240827.1809
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