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  1. '@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.3/context.json
  2. about: []
  3. access:
  4. - schemaKey: AccessRequirements
  5. status: dandi:OpenAccess
  6. assetsSummary:
  7. approach:
  8. - name: microscopy approach; cell population imaging
  9. schemaKey: ApproachType
  10. dataStandard:
  11. - identifier: RRID:SCR_015242
  12. name: Neurodata Without Borders (NWB)
  13. schemaKey: StandardsType
  14. measurementTechnique:
  15. - name: surgical technique
  16. schemaKey: MeasurementTechniqueType
  17. - name: two-photon microscopy technique
  18. schemaKey: MeasurementTechniqueType
  19. numberOfBytes: 7401238168
  20. numberOfFiles: 4
  21. numberOfSubjects: 5
  22. schemaKey: AssetsSummary
  23. species:
  24. - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
  25. name: Mus musculus - House mouse
  26. schemaKey: SpeciesType
  27. variableMeasured:
  28. - TwoPhotonSeries
  29. - ImagingPlane
  30. - OpticalChannel
  31. citation: Klienfeld, David; Yao, Pantong; Liu, Rui; Broginni, Thomas; Thunemann, Martin;
  32. University of California, San Diego; Boston University; University of California,
  33. San Diego (2023) Guide to the construction and use of an adaptive optics two-photon
  34. microscope with direct wavefront sensing (Version 0.230302.2331) [Data set]. DANDI
  35. archive. https://dandiarchive.org/dandiset/000454/0.230302.2331
  36. contributor:
  37. - affiliation: []
  38. email: dk@physics.ucsd.edu
  39. includeInCitation: true
  40. name: Klienfeld, David
  41. roleName:
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  45. url: http://ucsd.edu/
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  47. email: p1yao@health.ucsd.edu
  48. includeInCitation: true
  49. name: Yao, Pantong
  50. roleName:
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  53. url: http://ucsd.edu/
  54. - affiliation: []
  55. email: rul087@physics.ucsd.edu
  56. includeInCitation: true
  57. name: Liu, Rui
  58. roleName:
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  60. schemaKey: Person
  61. url: http://ucsd.edu/
  62. - affiliation: []
  63. includeInCitation: true
  64. name: Broginni, Thomas
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  70. includeInCitation: true
  71. name: Thunemann, Martin
  72. roleName:
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  75. url: http://www.bu.edu/
  76. - awardNumber: U24 EB028942
  77. contactPoint: []
  78. identifier: https://ror.org/0168r3w48
  79. includeInCitation: true
  80. name: University of California, San Diego
  81. roleName:
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  84. url: http://ucsd.edu/
  85. - awardNumber: U19 NS123717
  86. contactPoint: []
  87. identifier: https://ror.org/05qwgg493
  88. includeInCitation: true
  89. name: Boston University
  90. roleName:
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  93. url: http://www.bu.edu/
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  98. name: University of California, San Diego
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  102. url: http://ucsd.edu/
  103. dateCreated: '2023-03-02T21:52:11.686223+00:00'
  104. datePublished: '2023-03-02T23:31:53.735293+00:00'
  105. description: Two-photon microscopy, combined with appropriate optical labeling, has
  106. enabled the study of structure and function throughout animals and their organ systems,
  107. especially nervous systems. This methodology enables, for example, the measurement
  108. and tracking of sub-micrometer structures within brain cells, the spatio-temporal
  109. mapping of spikes in individual neurons, and the spatio-temporal mapping of transmitter
  110. release in individual synapses. Yet the spatial resolution of two-photon microscopy
  111. rapidly degrades as imaging is attempted at depths more than a few scattering lengths
  112. into tissue, i.e., below the superficial layers that constitute the top 300 to 400 µm
  113. of neocortex. To obviate this limitation, we measure the wavefront of the guide
  114. star at the focus of the excitation beam and utilize adaptive optics that alters
  115. the incident wavefront to achieve an improved focal volume. We describe the construction,
  116. calibration, and operation of a two-photon microscope that incorporates adaptive
  117. optics to restore diffraction-limited resolution throughout the nearly 900 µm depth
  118. of mouse cortex. Our realization utilizes a guide star formed by excitation of red-shifted
  119. dye within the blood serum to directly measure the wavefront. We incorporate predominantly
  120. commercial optical, optomechanical, mechanical, and electronic components; computer
  121. aided design models of the exceptional custom components are supplied. The resultant
  122. adaptive-optics two-photon microscope is modular and allows for expanded imaging
  123. and optical excitation capabilities. We demonstrate our methodology in mouse neocortex
  124. by imaging the morphology of somatostatin-expressing neurons that lie 700 µm beneath
  125. the pia, calcium dynamics of layer 5b projection neurons, and thalamocortical glutamate
  126. transmission to L4 neurons.
  127. ethicsApproval: []
  128. id: DANDI:000454/0.230302.2331
  129. identifier: DANDI:000454
  130. keywords: []
  131. license:
  132. - spdx:CC0-1.0
  133. manifestLocation:
  134. - https://dandiarchive.s3.amazonaws.com/dandisets/000454/0.230302.2331/assets.yaml
  135. name: Guide to the construction and use of an adaptive optics two-photon microscope
  136. with direct wavefront sensing
  137. protocol: []
  138. publishedBy:
  139. endDate: '2023-03-02T23:31:53.735293+00:00'
  140. id: urn:uuid:c5b0d82b-e823-4044-86bd-fc596384be61
  141. name: DANDI publish
  142. schemaKey: PublishActivity
  143. startDate: '2023-03-02T23:31:53.735293+00:00'
  144. wasAssociatedWith:
  145. - id: urn:uuid:2287b0ae-2955-472d-b285-189a0377ed92
  146. identifier: RRID:SCR_017571
  147. name: DANDI API
  148. schemaKey: Software
  149. version: 0.1.0
  150. relatedResource: []
  151. repository: https://dandiarchive.org
  152. schemaKey: Dandiset
  153. schemaVersion: 0.6.3
  154. studyTarget: []
  155. url: https://dandiarchive.org/dandiset/000454/0.230302.2331
  156. version: 0.230302.2331
  157. wasGeneratedBy: []
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