australasian-genomics-dataset/s3://threatenedspecies/Neophema_chrysogaster

Thank you for your interest in the Orange bellied parrot genome produced by Australasian Genomes.

Files:
Genome assembly Neochry1.pri.20230906.fa.gz .
Global transcriptome of 8 tissues bNeochry_global_20230920.fa.gz .
Genome annotation bNeochry1_fgenesh_20231024.gff3.gz .

Acknowledgement:
Australasian Genomes is hosted by the Australasian Wildlife Genomics Group, The University of Sydney and is the data repository for the Threatened Species Initiative and the ARC Centre of Excellence for Innovations in Peptide and Protein Science.

The authors acknowledge the traditional custodians of the land upon which the orange-bellied parrot resides, as well as the custodians of the historic range of the species and pay our respects to their elders past and present. We acknowledge the many years of effort and work of the orange-bellied parrot recovery team in the conservation of this species. We thank Priam Psittaculture Centre for sampling of the reference genome individual and transcriptomes. The authors wish to acknowledge the use of the services and facilities of the Australian Genome Research Facility; Ramaciotti Centre for Genomics at the University of New South Wales; and the Biomolecular Resource Facility at the John Curtin School of Medical Research, Australian National University. This work was supported by resources provided by the Pawsey Supercomputing Centre with funding from the Australian Government and the Government of Western Australia; the Sydney Informatics Hub, a Core Research Facility of the University of Sydney; Amazon Web Services; RONIN; and Australian Biocommons which is enabled by NCRIS via Bioplatforms Australia Threatened Species Initiative funding.

Publication:
Luke W. Silver, Katherine A. Farquharson, Emma Peel, M. Thomas P. Gilbert, Katherine Belov, Hernán E. Morales, Carolyn J. Hogg (under preparation). Loss  of genome-wide and immunogenetic diversity in a severely bottlenecked bird, the orange-bellied parrot (Neophema chrysogaster)

Licensing:
CC-BY-4.0