DagsHub-Datasets
/
australasian-genomics-dataset


  
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            Thank you for your interest in the King Island scrubtit genome produced by Australasian Genomes.

Files:
genome assembly fasta - bAcamag1.pri.20230524.fasta.gz
genome annotations - bAcamag1.fgenesh.20230524.gff3
reference-aligned global transcriptome, assembled from reads from 6 tissues (heart, brain, spleen, kidney, liver, and gonads) - bAcamag1.global.20230524.fasta.gz

Acknowledgement:
Australasian Genomes is hosted by the Australasian Wildlife Genomics Group, The University of Sydney and is the data repository for the Threatened Species Initiative and the ARC Centre of Excellence for Innovations in Peptide and Protein Science.
We acknowledge the traditional custodians of the land on which this research was conducted. This study was funded by the Commonwealth Department of Environment and Climate Change, BirdLife Australia and generous donors to the Difficult Bird Research Group. Sequencing received in-kind support from the NCRIS funded BioPlatforms Threatened Species Initiative. Research was conducted under Tasmanian Scientific licence #TFA23010, ANU animal ethics permit #A2021/33 and ABBBS banding authorities #3192 & #2833. Computational resources were provided by Amazon Web Services and RONIN; the Australian Biocommons supported FGENESH++ service; the Pawsey Supercomputing Research Centre with funding from the Australian Government and the Government of Western Australia; Galaxy Australia, a service provided by the Australian Biocommons and its partners; and the University of Sydney’s High Performance Computing facility Artemis. We thank Mark Carey, the King Island Conservation Action Plan working group, Sustainable Timber Tasmania, the Tasmanian National Parks and Wildlife Service & H. Camm & family for logistical support. KAF is supported by the Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science (CE200100012).

Please cite the AWS ODS and the following paper (currently a pre-print) if you use these resources:
Crates, R., von Takach, B., Young, C.M., Stojanovic, D., Neaves, L., Murphy, L., Gautschi, D., Hogg, C.J., Heinsohn, R., Bell, P., Farquharson, K.A. Genomic insights into a critically endangered island endemic songbird provide a roadmap for preventing extinction. Authorea (preprint). https://doi.org/10.22541/au.169471129.99174363/v1

Licensing:
CC-BY-4.0