1000 Genomes

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/1000-genomes-dataset")

fs.listdir("s3://1000genomes")

Description:

The 1000 Genomes Project is an international collaboration which has established the most detailed catalogue of human genetic variation, including SNPs, structural variants, and their haplotype context. The final phase of the project sequenced more than 2500 individuals from 26 different populations around the world and produced an integrated set of phased haplotypes with more than 80 million variants for these individuals.

Contact:

The 1000 Genomes Project is an international collaboration which has established the most detailed catalogue of human genetic variation, including SNPs, structural variants, and their haplotype context. The final phase of the project sequenced more than 2500 individuals from 26 different populations around the world and produced an integrated set of phased haplotypes with more than 80 million variants for these individuals.

Update Frequency:

Not updated

Managed By:

National Institutes of Health

Resources:

1. resource:
   • Description: http://www.internationalgenome.org/formats
   • ARN: arn:aws:s3:::1000genomes
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, genetic, genomic, life sciences, whole genome sequencing, fastq

Publication:

1. publication:
   • Title: Exploratory data analysis of genomic datasets using ADAM and Mango with Apache Spark on Amazon EMR
   • URL: https://aws.amazon.com/blogs/big-data/exploratory-data-analysis-of-genomic-datasets-using-adam-and-mango-with-apache-spark-on-amazon-emr/
   • AuthorName: Alyssa Marrow
   • AuthorURL: https://research.eecs.berkeley.edu/~akmorrow/