Annalie
/
gene-expressions


  
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            stages:
  prepare:
    cmd: python gene_expressions/prepare.py data.pkl
    deps:
    - data/raw/actual.csv
    - data/raw/data_set_ALL_AML_independent.csv
    - data/raw/data_set_ALL_AML_train.csv
    - gene_expressions/prepare.py
    outs:
    - data/prepared/data.pkl
  train:
    cmd: python gene_expressions/train.py data/prepared model.pkl
    deps:
    - data/prepared/data.pkl
    - gene_expressions/train.py
    outs:
    - model/random_forest_model.pkl
  evaluation:
    cmd: python gene_expressions/evaluate.py ROC_AUC_curve.png Confusion_Matrix.png
    deps:
    - data/prepared/data.pkl
    - gene_expressions/evaluate.py
    - model/random_forest_model.pkl
    outs:
    - reports/plots/Confusion_Matrix.png
    - reports/plots/ROC_AUC_curve.png
    metrics:
    - reports/metrics/eval.json:
        cache: false