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stages:
preprocess_berger:
cmd: cp downloaded-data/berger.csv data && echo "data/berger.csv" >> .gitignore
&& git add .gitignore
deps:
- downloaded-data/berger.csv
outs:
- data/berger.csv:
cache: false
preprocess_herzig:
cmd: cp downloaded-data/herzig.csv data && echo "data/herzig.csv" >> .gitignore
&& git add .gitignore
deps:
- downloaded-data/herzig.csv
outs:
- data/herzig.csv:
cache: false
preprocess_1151-commits:
cmd: cp downloaded-data/1151-commits.csv data && echo "data/1151-commits.csv"
>> .gitignore && git add .gitignore
deps:
- downloaded-data/1151-commits.csv
outs:
- data/1151-commits.csv:
cache: false
preprocess_200k-commits:
cmd: cp downloaded-data/200k-commits.csv data && echo "data/200k-commits.csv"
>> .gitignore && git add .gitignore
deps:
- downloaded-data/200k-commits.csv
outs:
- data/200k-commits.csv:
cache: false
preprocess_200k-commits-issues:
cmd: cp downloaded-data/200k-commits-issues.csv data && echo "data/200k-commits-issues.csv"
>> .gitignore && git add .gitignore
deps:
- downloaded-data/200k-commits-issues.csv
outs:
- data/200k-commits-issues.csv:
cache: false
preprocess_200k-commits-files:
cmd: 7z x downloaded-data/200k-commits-files.csv.7z -odata && echo "data/200k-commits-files.csv"
>> .gitignore && git add .gitignore
deps:
- downloaded-data/200k-commits-files.csv.7z
outs:
- data/200k-commits-files.csv:
cache: false
preprocess_200k-commits-link-issues:
cmd: cp downloaded-data/200k-commits-link-issues.csv data && echo "data/200k-commits-link-issues.csv"
>> .gitignore && git add .gitignore
deps:
- downloaded-data/200k-commits-link-issues.csv
outs:
- data/200k-commits-link-issues.csv:
cache: false
preprocess_200k-commits-manual-labels:
cmd: cp downloaded-data/200k-commits-manual-labels.csv data && echo "data/200k-commits-manual-labels.csv"
>> .gitignore && git add .gitignore
deps:
- downloaded-data/200k-commits-manual-labels.csv
outs:
- data/200k-commits-manual-labels.csv:
cache: false
preprocess_smells-train:
cmd: data-preprocessing/smells.sh
deps:
- data-preprocessing/smells.sh
- downloaded-data/smells-madeyski.csv
outs:
- data/smells/train.csv
preprocess_smells-test:
cmd: data-preprocessing/smells.sh
deps:
- data-preprocessing/smells.sh
- downloaded-data/smells-madeyski.csv
outs:
- data/smells/test.csv
parse_labels:
cmd: bohr parse-labels
deps:
- labels
outs:
- labels.py:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__200k-commits:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
200k-commits
deps:
- data/200k-commits-files.csv
- data/200k-commits-issues.csv
- data/200k-commits-manual-labels.csv
- data/200k-commits.csv
- heuristics/bugginess.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_200k-commits.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_200k-commits.json:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__1151-commits:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
1151-commits
deps:
- data/1151-commits.csv
- heuristics/bugginess.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_1151-commits.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_1151-commits.json:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__berger:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
berger
deps:
- data/berger.csv
- heuristics/bugginess.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_berger.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_berger.json:
cache: false
bugginess_apply_heuristics__heuristics_bugginess__herzig:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
herzig
deps:
- data/herzig.csv
- heuristics/bugginess.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_herzig.pkl
metrics:
- metrics/bugginess/heuristics.bugginess/heuristic_metrics_herzig.json:
cache: false
bugginess_apply_heuristics__heuristics_manuallabels__200k-commits:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset 200k-commits
deps:
- data/200k-commits-files.csv
- data/200k-commits-issues.csv
- data/200k-commits-manual-labels.csv
- data/200k-commits.csv
- heuristics/manuallabels.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_200k-commits.pkl
metrics:
- metrics/bugginess/heuristics.manuallabels/heuristic_metrics_200k-commits.json:
cache: false
bugginess_apply_heuristics__heuristics_manuallabels__1151-commits:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset 1151-commits
deps:
- data/1151-commits.csv
- heuristics/manuallabels.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_1151-commits.pkl
metrics:
- metrics/bugginess/heuristics.manuallabels/heuristic_metrics_1151-commits.json:
cache: false
bugginess_apply_heuristics__heuristics_manuallabels__berger:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset berger
deps:
- data/berger.csv
- heuristics/manuallabels.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_berger.pkl
metrics:
- metrics/bugginess/heuristics.manuallabels/heuristic_metrics_berger.json:
cache: false
bugginess_apply_heuristics__heuristics_manuallabels__herzig:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset herzig
deps:
- data/herzig.csv
- heuristics/manuallabels.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_herzig.pkl
metrics:
- metrics/bugginess/heuristics.manuallabels/heuristic_metrics_herzig.json:
cache: false
bugginess_combine_heuristics:
cmd: bohr apply-heuristics bugginess
deps:
- generated/bugginess/heuristics.bugginess/heuristic_matrix_1151-commits.pkl
- generated/bugginess/heuristics.bugginess/heuristic_matrix_200k-commits.pkl
- generated/bugginess/heuristics.bugginess/heuristic_matrix_berger.pkl
- generated/bugginess/heuristics.bugginess/heuristic_matrix_herzig.pkl
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_1151-commits.pkl
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_200k-commits.pkl
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_berger.pkl
- generated/bugginess/heuristics.manuallabels/heuristic_matrix_herzig.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/analysis_1151-commits.csv:
cache: false
- generated/bugginess/analysis_200k-commits.csv:
cache: false
- generated/bugginess/analysis_berger.csv:
cache: false
- generated/bugginess/analysis_herzig.csv:
cache: false
- generated/bugginess/heuristic_matrix_1151-commits.pkl
- generated/bugginess/heuristic_matrix_200k-commits.pkl
- generated/bugginess/heuristic_matrix_berger.pkl
- generated/bugginess/heuristic_matrix_herzig.pkl
metrics:
- metrics/bugginess/analysis_1151-commits.json:
cache: false
- metrics/bugginess/analysis_200k-commits.json:
cache: false
- metrics/bugginess/analysis_berger.json:
cache: false
- metrics/bugginess/analysis_herzig.json:
cache: false
- metrics/bugginess/heuristic_metrics_1151-commits.json:
cache: false
- metrics/bugginess/heuristic_metrics_200k-commits.json:
cache: false
- metrics/bugginess/heuristic_metrics_berger.json:
cache: false
- metrics/bugginess/heuristic_metrics_herzig.json:
cache: false
bugginess_train_label_model:
cmd: bohr train-label-model bugginess 200k-commits
deps:
- data/1151-commits.csv
- data/berger.csv
- data/herzig.csv
- generated/bugginess/heuristic_matrix_1151-commits.pkl
- generated/bugginess/heuristic_matrix_200k-commits.pkl
- generated/bugginess/heuristic_matrix_berger.pkl
- generated/bugginess/heuristic_matrix_herzig.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/bugginess/label_model.pkl
- generated/bugginess/label_model_weights.csv:
cache: false
metrics:
- metrics/bugginess/label_model_metrics.json:
cache: false
bugginess_label_dataset_200k-commits:
cmd: bohr label-dataset bugginess 200k-commits
deps:
- data/200k-commits.csv
- generated/bugginess/heuristic_matrix_200k-commits.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/200k-commits.labeled.csv
bugginess_label_dataset_1151-commits:
cmd: bohr label-dataset bugginess 1151-commits
deps:
- data/1151-commits.csv
- generated/bugginess/heuristic_matrix_1151-commits.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/1151-commits.labeled.csv
bugginess_label_dataset_berger:
cmd: bohr label-dataset bugginess berger
deps:
- data/berger.csv
- generated/bugginess/heuristic_matrix_berger.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/berger.labeled.csv
bugginess_label_dataset_herzig:
cmd: bohr label-dataset bugginess herzig
deps:
- data/herzig.csv
- generated/bugginess/heuristic_matrix_herzig.pkl
- generated/bugginess/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/herzig.labeled.csv
smells_apply_heuristics__heuristics_smells__smells-train:
cmd: bohr apply-heuristics smells --heuristic-group heuristics.smells --dataset
smells-train
deps:
- data/smells/train.csv
- heuristics/smells.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/heuristics.smells/heuristic_matrix_smells-train.pkl
metrics:
- metrics/smells/heuristics.smells/heuristic_metrics_smells-train.json:
cache: false
smells_apply_heuristics__heuristics_smells__smells-test:
cmd: bohr apply-heuristics smells --heuristic-group heuristics.smells --dataset
smells-test
deps:
- data/smells/test.csv
- heuristics/smells.py
- labels.py
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/heuristics.smells/heuristic_matrix_smells-test.pkl
metrics:
- metrics/smells/heuristics.smells/heuristic_metrics_smells-test.json:
cache: false
smells_combine_heuristics:
cmd: bohr apply-heuristics smells
deps:
- generated/smells/heuristics.smells/heuristic_matrix_smells-test.pkl
- generated/smells/heuristics.smells/heuristic_matrix_smells-train.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/analysis_smells-test.csv:
cache: false
- generated/smells/analysis_smells-train.csv:
cache: false
- generated/smells/heuristic_matrix_smells-test.pkl
- generated/smells/heuristic_matrix_smells-train.pkl
metrics:
- metrics/smells/analysis_smells-test.json:
cache: false
- metrics/smells/analysis_smells-train.json:
cache: false
- metrics/smells/heuristic_metrics_smells-test.json:
cache: false
- metrics/smells/heuristic_metrics_smells-train.json:
cache: false
smells_train_label_model:
cmd: bohr train-label-model smells smells-train
deps:
- data/smells/test.csv
- generated/smells/heuristic_matrix_smells-test.pkl
- generated/smells/heuristic_matrix_smells-train.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- generated/smells/label_model.pkl
- generated/smells/label_model_weights.csv:
cache: false
metrics:
- metrics/smells/label_model_metrics.json:
cache: false
smells_label_dataset_smells-train:
cmd: bohr label-dataset smells smells-train
deps:
- data/smells/train.csv
- generated/smells/heuristic_matrix_smells-train.pkl
- generated/smells/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/smells-train.labeled.csv
smells_label_dataset_smells-test:
cmd: bohr label-dataset smells smells-test
deps:
- data/smells/test.csv
- generated/smells/heuristic_matrix_smells-test.pkl
- generated/smells/label_model.pkl
params:
- bohr.json:
- bohr_framework_version
outs:
- labeled-datasets/smells-test.labeled.csv
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