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schema: '2.0'
stages:
preprocess_1151-commits:
cmd: cp downloaded-data/1151-commits.csv data && echo "data/1151-commits.csv"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/1151-commits.csv
md5: dd000fe19ba4aac9efa3a3856e2acc5e
size: 346306
outs:
- path: data/1151-commits.csv
md5: dd000fe19ba4aac9efa3a3856e2acc5e
size: 346306
preprocess_herzig:
cmd: cp downloaded-data/herzig.csv data && echo "data/herzig.csv" >> .gitignore
&& git add .gitignore
deps:
- path: downloaded-data/herzig.csv
md5: 69a17c08643aed84b874384a2a57c7ed
size: 1483281
outs:
- path: data/herzig.csv
md5: 69a17c08643aed84b874384a2a57c7ed
size: 1483281
preprocess_smells-test:
cmd: data-preprocessing/smells.sh
deps:
- path: data-preprocessing/smells.sh
md5: 1792bc2011c1aba4d51cdca74beee11e
size: 2148
- path: downloaded-data/smells-madeyski.csv
md5: 3d60d277b9fa1306c05ccfdefe22e9d1
size: 7513770
outs:
- path: data/smells/test.csv
md5: 0200db0eec17554a48a5b3a25719fd03
size: 77607
parse_labels:
cmd: bohr porcelain parse-labels
deps:
- path: labels
md5: f54bde6a2ca21ad1a0ba7d4ff9a5b9a5.dir
size: 619
nfiles: 2
outs:
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
smells_apply_heuristics__heuristics_smells__smells-test:
cmd: bohr porcelain apply-heuristics smells --heuristic-group heuristics.smells
--dataset smells-test
deps:
- path: data/smells/test.csv
md5: 0200db0eec17554a48a5b3a25719fd03
size: 77607
- path: heuristics/smells.py
md5: b1a5ed3a14eb9eae8924b8a43e3bc452
size: 712
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/smells/heuristics.smells/heuristic_matrix_smells-test.pkl
md5: a8924b3413a7258e4d22510885b4b886
size: 4230
- path: metrics/smells/heuristics.smells/heuristic_metrics_smells-test.json
md5: 2a7a29682c91259100e8d087b3accb4c
size: 72
preprocess_smells-train:
cmd: data-preprocessing/smells.sh
deps:
- path: data-preprocessing/smells.sh
md5: 1792bc2011c1aba4d51cdca74beee11e
size: 2148
- path: downloaded-data/smells-madeyski.csv
md5: 3d60d277b9fa1306c05ccfdefe22e9d1
size: 7513770
outs:
- path: data/smells/train.csv
md5: 7fc9a7617e6f201523fba311317ba48f
size: 296970
smells_apply_heuristics__heuristics_smells__smells-train:
cmd: bohr porcelain apply-heuristics smells --heuristic-group heuristics.smells
--dataset smells-train
deps:
- path: data/smells/train.csv
md5: 7fc9a7617e6f201523fba311317ba48f
size: 296970
- path: heuristics/smells.py
md5: b1a5ed3a14eb9eae8924b8a43e3bc452
size: 712
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/smells/heuristics.smells/heuristic_matrix_smells-train.pkl
md5: aa1818fe86e1d8d999ddb4a0f7c20ad9
size: 14312
- path: metrics/smells/heuristics.smells/heuristic_metrics_smells-train.json
md5: 576a36563e43ce643bdd861930558217
size: 32
smells_combine_heuristics:
cmd: bohr porcelain apply-heuristics smells
deps:
- path: generated/smells/heuristics.smells/heuristic_matrix_smells-test.pkl
md5: a8924b3413a7258e4d22510885b4b886
size: 4230
- path: generated/smells/heuristics.smells/heuristic_matrix_smells-train.pkl
md5: aa1818fe86e1d8d999ddb4a0f7c20ad9
size: 14312
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/smells/analysis_smells-test.csv
md5: b3e54618879091f6014dbb90abffb50d
size: 336
- path: generated/smells/analysis_smells-train.csv
md5: 276a5dd60ab0bfc2da69c0c8c1bf843a
size: 250
- path: generated/smells/heuristic_matrix_smells-test.pkl
md5: b1fd4c196e2f967e9fca6b8f9c572272
size: 4230
- path: generated/smells/heuristic_matrix_smells-train.pkl
md5: 2aa34f53b90128efb74215acdf7d995b
size: 14312
- path: metrics/smells/analysis_smells-test.json
md5: 23e9b96402687da1a63c6765c925377e
size: 1118
- path: metrics/smells/analysis_smells-train.json
md5: 88c0d6e20b8d101f5309d2f951cb6ee7
size: 696
- path: metrics/smells/heuristic_metrics_smells-test.json
md5: 2a7a29682c91259100e8d087b3accb4c
size: 72
- path: metrics/smells/heuristic_metrics_smells-train.json
md5: 576a36563e43ce643bdd861930558217
size: 32
bugginess_apply_heuristics__heuristics_bugginess__1151-commits:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.bugginess
--dataset 1151-commits
deps:
- path: data/1151-commits.csv
md5: dd000fe19ba4aac9efa3a3856e2acc5e
size: 346306
- path: heuristics/bugginess.py
md5: a55520b99cbaad572a26886b52e74652
size: 8900
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_1151-commits.pkl
md5: 732df7ec50a8165d7e9a1e79415064b5
size: 2792584
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_1151-commits.json
md5: 590f784b4669d243ce5bff2a8d09345b
size: 73
preprocess_berger:
cmd: cp downloaded-data/berger.csv data && echo "data/berger.csv" >> .gitignore
&& git add .gitignore
deps:
- path: downloaded-data/berger.csv
md5: 126de41c9204a9e807e72406b1f9d631
size: 62247
outs:
- path: data/berger.csv
md5: 126de41c9204a9e807e72406b1f9d631
size: 62247
bugginess_apply_heuristics__heuristics_bugginess__berger:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.bugginess
--dataset berger
deps:
- path: data/berger.csv
md5: 126de41c9204a9e807e72406b1f9d631
size: 62247
- path: heuristics/bugginess.py
md5: a55520b99cbaad572a26886b52e74652
size: 8900
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_berger.pkl
md5: e93deda462057f4a205960cf0d24d2ec
size: 917768
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_berger.json
md5: feb313c11f1c1afb0fc58ef5ad73ab6a
size: 73
preprocess_bugginess-train:
cmd: 7z x downloaded-data/bugginess_train.7z -odata/bugginess_train && echo "data/bugginess_train"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/bugginess_train.7z
md5: d4dc26c2b0f0704b1559f2c0ce6320d7
size: 255969433
outs:
- path: data/bugginess_train
md5: f7cbfc7a91dfeca3aff7b7d3b6d7ea72.dir
size: 2489726547
nfiles: 3
bugginess_apply_heuristics__heuristics_bugginess__bugginess-train:
cmd: bohr apply-heuristics bugginess --heuristic-group heuristics.bugginess --dataset
bugginess-train
deps:
- path: data/bugginess_train
md5: f7cbfc7a91dfeca3aff7b7d3b6d7ea72.dir
size: 2489726547
nfiles: 3
- path: heuristics/bugginess.py
md5: 9f9ea19cd5c53bbbd41f94cf7b8f3d14
size: 2873
- path: heuristics/keywords
md5: b4e7587c1b8e4e1461685a305d48bd66.dir
size: 1382
nfiles: 5
- path: labels.py
md5: 4ad220b4c289b2d8597bd6431c6565a6
size: 1707
params:
bohr.json:
bohr_framework_version: 0.4.2
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_bugginess-train.pkl
md5: 5d1c71dcd36417356cabe2e340ca959d
size: 500879984
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_bugginess-train.json
md5: 9c903723760f0000193679b361437e41
size: 32
bugginess_apply_heuristics__heuristics_bugginess__herzig:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.bugginess
--dataset herzig
deps:
- path: data/herzig.csv
md5: 69a17c08643aed84b874384a2a57c7ed
size: 1483281
- path: heuristics/bugginess.py
md5: a55520b99cbaad572a26886b52e74652
size: 8900
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_herzig.pkl
md5: 15bf08d69bf793c3978a2ffe1458c76d
size: 12608792
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_herzig.json
md5: 525291ad999e1bee97789045c1ae8333
size: 72
bugginess_combine_heuristics:
cmd: bohr porcelain apply-heuristics bugginess
deps:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_1151-commits.pkl
md5: 732df7ec50a8165d7e9a1e79415064b5
size: 2792584
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_200k-commits.pkl
md5: fa93c70bb58f111b85db389bd0c74ad1
size: 498669340
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_berger.pkl
md5: e93deda462057f4a205960cf0d24d2ec
size: 917768
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_developer-labeled-commits.pkl
md5: fbbed1142254d6cd9b922290565a6313
size: 2348040
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_fine-grained-refactorings.pkl
md5: b9c7d542ac5cc3e3aa9a2114d794a0f8
size: 3708248
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_herzig.pkl
md5: 15bf08d69bf793c3978a2ffe1458c76d
size: 12608792
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_1151-commits.pkl
md5: 6586d8bf9010aff3be65327facde2edc
size: 9975
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_200k-commits.pkl
md5: 7febb1ec7e27a0b380e83a4c732946ab
size: 1651964
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_berger.pkl
md5: e93c0bbc779f1cf928251c4613ef5cc6
size: 3767
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_developer-labeled-commits.pkl
md5: ff48bc7a29abb4802a76e4d4882edd86
size: 8503
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_fine-grained-refactorings.pkl
md5: e1466fb17a3ce93547649ebd5d6e2210
size: 13007
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_herzig.pkl
md5: 8e22aefcc1b79b3bc8c00ebd4503dca3
size: 42479
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/analysis_1151-commits.csv
md5: b9a8293c90963f2ce36669ded72d2e1a
size: 24263
- path: generated/bugginess/analysis_200k-commits.csv
md5: c0fffd05e85647c9ebc9f005e279b798
size: 30404
- path: generated/bugginess/analysis_berger.csv
md5: 4994f12a769112913fba6a9a7dbb0eb4
size: 21371
- path: generated/bugginess/analysis_developer-labeled-commits.csv
md5: b6c2c87d6a2ce080928f504848f2d4ae
size: 22425
- path: generated/bugginess/analysis_fine-grained-refactorings.csv
md5: 9367a5bed1da8d9f21967129870f31e8
size: 21050
- path: generated/bugginess/analysis_herzig.csv
md5: ea0eb8e17dbdb9b9ebcf5f7cedbc979a
size: 25808
- path: generated/bugginess/heuristic_matrix_1151-commits.pkl
md5: a0a1a7fbd7512b6cb31eb06d61c3bf9c
size: 2801973
- path: generated/bugginess/heuristic_matrix_200k-commits.pkl
md5: e4dd0ab575a03ed8b0a142176ac9ecf7
size: 500320716
- path: generated/bugginess/heuristic_matrix_berger.pkl
md5: 1b5504acb50064f2971a00799380d780
size: 920949
- path: generated/bugginess/heuristic_matrix_developer-labeled-commits.pkl
md5: 6ee04d7e28587b9134b30f6a3d9ef3d9
size: 2355957
- path: generated/bugginess/heuristic_matrix_fine-grained-refactorings.pkl
md5: e8c17b404564787dc5bdffdff4b75b18
size: 3720669
- path: generated/bugginess/heuristic_matrix_herzig.pkl
md5: c604a8886af18d4982a1f3626fa57619
size: 12650685
- path: metrics/bugginess/analysis_1151-commits.json
md5: cfd93443f948403db776e31f346eecb4
size: 108603
- path: metrics/bugginess/analysis_200k-commits.json
md5: 2aa1f13d807bd4ad4821128353c1747e
size: 78819
- path: metrics/bugginess/analysis_berger.json
md5: 3d99febdbd632bb38a06cdb7c2bf4e62
size: 105095
- path: metrics/bugginess/analysis_developer-labeled-commits.json
md5: c8df22c135bd5813bcf9682a0e1e375a
size: 106171
- path: metrics/bugginess/analysis_fine-grained-refactorings.json
md5: 4dcc67f60b3dafe18542bc800be719d1
size: 65913
- path: metrics/bugginess/analysis_herzig.json
md5: 30b7f8dc4e151d6d5691ed1965b09aff
size: 110390
- path: metrics/bugginess/heuristic_metrics_1151-commits.json
md5: 590f784b4669d243ce5bff2a8d09345b
size: 73
- path: metrics/bugginess/heuristic_metrics_200k-commits.json
md5: 4c5581c69bb80690b5edffe31c2948cf
size: 31
- path: metrics/bugginess/heuristic_metrics_berger.json
md5: feb313c11f1c1afb0fc58ef5ad73ab6a
size: 73
- path: metrics/bugginess/heuristic_metrics_developer-labeled-commits.json
md5: 936006aa024d80022004b24caf729c4d
size: 73
- path: metrics/bugginess/heuristic_metrics_fine-grained-refactorings.json
md5: 164d888c48bfb076fa97782a2aa703a8
size: 31
- path: metrics/bugginess/heuristic_metrics_herzig.json
md5: 525291ad999e1bee97789045c1ae8333
size: 72
bugginess_train_label_model:
cmd: bohr porcelain train-label-model bugginess 200k-commits
deps:
- path: data/1151-commits.csv
md5: dd000fe19ba4aac9efa3a3856e2acc5e
size: 346306
- path: data/berger.csv
md5: 126de41c9204a9e807e72406b1f9d631
size: 62247
- path: data/developer-labeled.csv
md5: db835bc072a7fbfb2fa947c1d5dbb1aa
size: 121817
- path: data/herzig.csv
md5: 69a17c08643aed84b874384a2a57c7ed
size: 1483281
- path: generated/bugginess/heuristic_matrix_1151-commits.pkl
md5: a0a1a7fbd7512b6cb31eb06d61c3bf9c
size: 2801973
- path: generated/bugginess/heuristic_matrix_200k-commits.pkl
md5: e4dd0ab575a03ed8b0a142176ac9ecf7
size: 500320716
- path: generated/bugginess/heuristic_matrix_berger.pkl
md5: 1b5504acb50064f2971a00799380d780
size: 920949
- path: generated/bugginess/heuristic_matrix_developer-labeled-commits.pkl
md5: 6ee04d7e28587b9134b30f6a3d9ef3d9
size: 2355957
- path: generated/bugginess/heuristic_matrix_herzig.pkl
md5: c604a8886af18d4982a1f3626fa57619
size: 12650685
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
- path: generated/bugginess/label_model_weights.csv
md5: 69b5d4a9e3903ac9d392386c61b1c9b2
size: 20318
- path: metrics/bugginess/label_model_metrics.json
md5: d3589a6129da95be758f794d340fc0af
size: 642
bugginess_label_dataset_herzig:
cmd: bohr porcelain label-dataset bugginess herzig
deps:
- path: data/herzig.csv
md5: 69a17c08643aed84b874384a2a57c7ed
size: 1483281
- path: generated/bugginess/heuristic_matrix_herzig.pkl
md5: c604a8886af18d4982a1f3626fa57619
size: 12650685
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/bugginess/herzig.labeled.csv
md5: 8c839c298f7c3e137b7f94859bc9571d
size: 1539779
smells_train_label_model:
cmd: bohr porcelain train-label-model smells smells-train
deps:
- path: data/smells/test.csv
md5: 0200db0eec17554a48a5b3a25719fd03
size: 77607
- path: generated/smells/heuristic_matrix_smells-test.pkl
md5: b1fd4c196e2f967e9fca6b8f9c572272
size: 4230
- path: generated/smells/heuristic_matrix_smells-train.pkl
md5: 2aa34f53b90128efb74215acdf7d995b
size: 14312
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/smells/label_model.pkl
md5: 930d6534b7c29c17d248df2eeedf140f
size: 4874
- path: generated/smells/label_model_weights.csv
md5: c1f7fbb15c07cadcf0a4e050f51fa89e
size: 179
- path: metrics/smells/label_model_metrics.json
md5: 2040bf8b04f316ce72cfff68a4423b35
size: 156
smells_label_dataset_smells-train:
cmd: bohr porcelain label-dataset smells smells-train
deps:
- path: data/smells/train.csv
md5: 7fc9a7617e6f201523fba311317ba48f
size: 296970
- path: generated/smells/heuristic_matrix_smells-train.pkl
md5: 2aa34f53b90128efb74215acdf7d995b
size: 14312
- path: generated/smells/label_model.pkl
md5: 930d6534b7c29c17d248df2eeedf140f
size: 4874
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/smells/smells-train.labeled.csv
md5: b3433438369f2ca2276c22cff309631e
size: 296121
smells_label_dataset_smells-test:
cmd: bohr porcelain label-dataset smells smells-test
deps:
- path: data/smells/test.csv
md5: 0200db0eec17554a48a5b3a25719fd03
size: 77607
- path: generated/smells/heuristic_matrix_smells-test.pkl
md5: b1fd4c196e2f967e9fca6b8f9c572272
size: 4230
- path: generated/smells/label_model.pkl
md5: 930d6534b7c29c17d248df2eeedf140f
size: 4874
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/smells/smells-test.labeled.csv
md5: fe4a97ad13be96db8f076fda178bf984
size: 77279
bugginess_label_dataset_bugginess-train:
cmd: bohr label-dataset bugginess bugginess-train
deps:
- path: data/bugginess_train
md5: f7cbfc7a91dfeca3aff7b7d3b6d7ea72.dir
size: 2489726547
nfiles: 3
- path: generated/bugginess/heuristic_matrix_bugginess-train.pkl
md5: d9141b7bf8b3eb25cf3e90490acbb812
size: 500879984
- path: generated/bugginess/label_model.pkl
md5: ce78684652e122b347fe0c7fc32ba035
size: 1863238
params:
bohr.json:
bohr_framework_version: 0.4.2
outs:
- path: labeled-datasets/bugginess-train.labeled.csv
md5: bfe4ac306c08f7188e094acc20e1ff03
size: 61623779
bugginess_label_dataset_1151-commits:
cmd: bohr porcelain label-dataset bugginess 1151-commits
deps:
- path: data/1151-commits.csv
md5: dd000fe19ba4aac9efa3a3856e2acc5e
size: 346306
- path: generated/bugginess/heuristic_matrix_1151-commits.pkl
md5: a0a1a7fbd7512b6cb31eb06d61c3bf9c
size: 2801973
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/bugginess/1151-commits.labeled.csv
md5: c108a362f144ea7898c448510dd0f794
size: 359783
bugginess_label_dataset_berger:
cmd: bohr porcelain label-dataset bugginess berger
deps:
- path: data/berger.csv
md5: 126de41c9204a9e807e72406b1f9d631
size: 62247
- path: generated/bugginess/heuristic_matrix_berger.pkl
md5: 1b5504acb50064f2971a00799380d780
size: 920949
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/bugginess/berger.labeled.csv
md5: 83a5bae043e167792a2e721cc4f383ee
size: 66776
bugginess_transformer_train:
cmd: bash classifiers/bugginess-transformer/train.sh labeled-data/bugginess.csv
deps:
- path: classifiers/bugginess-transformer/run.py
md5: faf5ebb8f0348b28aa1205e2c56cd41c
size: 12023
- path: classifiers/bugginess-transformer/train.sh
md5: 3a19e011c049042bbec7e8315e883c38
size: 557
- path: labeled-datasets/bugginess-train.labeled.csv
md5: bfe4ac306c08f7188e094acc20e1ff03
size: 61623779
- path: requirements.txt
md5: 29b4c5d66c523cec0712dbcdcced42bb
size: 21
outs:
- path: models/config.json
md5: 3effd3229ade2ed52eeb90d252790bf5
size: 716
- path: models/merges.txt
md5: fb9c1e34b6999f3a062df6ed4a604957
size: 458459
- path: models/pytorch_model.bin
md5: 40379a0207d19e2a24e116e941d7d675
size: 333858922
- path: models/special_tokens_map.json
md5: 17bb9e090d1d3a775683aba3ba610591
size: 239
- path: models/tokenizer_config.json
md5: e1a3e947aa301aadc524ee29f0dbcc39
size: 1257
- path: models/training_args.bin
md5: 408c3f12467908cabb77ded5ce3490ed
size: 2159
- path: models/vocab.json
md5: ca70df26ed267d27a9edde9c5341f17b
size: 813062
bugginess_transformer_test_herzig:
cmd: bash classifiers/bugginess-transformer/test.sh data/bugginess/herzig.csv
metrics/bugginess/transformer/herzig
deps:
- path: classifiers/bugginess-transformer/run.py
md5: faf5ebb8f0348b28aa1205e2c56cd41c
size: 12023
- path: classifiers/bugginess-transformer/test.sh
md5: 92c4020b4c026f9b85fd38ddee1bd528
size: 313
- path: data/herzig.csv
md5: 279936268f488e1e613f81a537f29055
size: 1458311
- path: models/config.json
md5: 3effd3229ade2ed52eeb90d252790bf5
size: 716
- path: models/merges.txt
md5: fb9c1e34b6999f3a062df6ed4a604957
size: 458459
- path: models/pytorch_model.bin
md5: 40379a0207d19e2a24e116e941d7d675
size: 333858922
- path: models/special_tokens_map.json
md5: 17bb9e090d1d3a775683aba3ba610591
size: 239
- path: models/tokenizer_config.json
md5: e1a3e947aa301aadc524ee29f0dbcc39
size: 1257
- path: models/training_args.bin
md5: 408c3f12467908cabb77ded5ce3490ed
size: 2159
- path: models/vocab.json
md5: ca70df26ed267d27a9edde9c5341f17b
size: 813062
- path: requirements.txt
md5: 29b4c5d66c523cec0712dbcdcced42bb
size: 21
outs:
- path: metrics/bugginess/transformer/herzig/eval_results.txt
md5: bd726240700dac6e926d5532eb76c5c4
size: 145
bugginess_transformer_test_1151-commits:
cmd: bash classifiers/bugginess-transformer/test.sh data/bugginess/1151-commits.csv
metrics/bugginess/transformer/1151-commits
deps:
- path: classifiers/bugginess-transformer/run.py
md5: faf5ebb8f0348b28aa1205e2c56cd41c
size: 12023
- path: classifiers/bugginess-transformer/test.sh
md5: 92c4020b4c026f9b85fd38ddee1bd528
size: 313
- path: data/1151-commits.csv
md5: 7b32f404edf5982eb4c5f51b956663c4
size: 341651
- path: models/config.json
md5: 3effd3229ade2ed52eeb90d252790bf5
size: 716
- path: models/merges.txt
md5: fb9c1e34b6999f3a062df6ed4a604957
size: 458459
- path: models/pytorch_model.bin
md5: 40379a0207d19e2a24e116e941d7d675
size: 333858922
- path: models/special_tokens_map.json
md5: 17bb9e090d1d3a775683aba3ba610591
size: 239
- path: models/tokenizer_config.json
md5: e1a3e947aa301aadc524ee29f0dbcc39
size: 1257
- path: models/training_args.bin
md5: 408c3f12467908cabb77ded5ce3490ed
size: 2159
- path: models/vocab.json
md5: ca70df26ed267d27a9edde9c5341f17b
size: 813062
- path: requirements.txt
md5: 29b4c5d66c523cec0712dbcdcced42bb
size: 21
outs:
- path: metrics/bugginess/transformer/1151-commits/eval_results.txt
md5: 52b1b36d2896195e78ca5b7d42de4839
size: 146
bugginess_transformer_label_1151-commits:
cmd: bash classifiers/bugginess-transformer/label.sh data/bugginess/1151-commits.csv
metrics/bugginess/transformer/1151-commits
deps:
- path: classifiers/bugginess-transformer/label.sh
md5: ce2646a4233e68991b57bbf2c7404ace
size: 320
- path: classifiers/bugginess-transformer/run.py
md5: faf5ebb8f0348b28aa1205e2c56cd41c
size: 12023
- path: data/1151-commits.csv
md5: 7b32f404edf5982eb4c5f51b956663c4
size: 341651
- path: models/config.json
md5: 3effd3229ade2ed52eeb90d252790bf5
size: 716
- path: models/merges.txt
md5: fb9c1e34b6999f3a062df6ed4a604957
size: 458459
- path: models/pytorch_model.bin
md5: 40379a0207d19e2a24e116e941d7d675
size: 333858922
- path: models/special_tokens_map.json
md5: 17bb9e090d1d3a775683aba3ba610591
size: 239
- path: models/tokenizer_config.json
md5: e1a3e947aa301aadc524ee29f0dbcc39
size: 1257
- path: models/training_args.bin
md5: 408c3f12467908cabb77ded5ce3490ed
size: 2159
- path: models/vocab.json
md5: ca70df26ed267d27a9edde9c5341f17b
size: 813062
- path: requirements.txt
md5: 29b4c5d66c523cec0712dbcdcced42bb
size: 21
outs:
- path: metrics/bugginess/transformer/1151-commits/assigned_labels.csv
md5: 527025d5fa114a28fa55eed7f4c10801
size: 6964
bugginess_transformer_test_berger:
cmd: bash classifiers/bugginess-transformer/test.sh data/bugginess/berger.csv
metrics/bugginess/transformer/berger
deps:
- path: classifiers/bugginess-transformer/run.py
md5: faf5ebb8f0348b28aa1205e2c56cd41c
size: 12023
- path: classifiers/bugginess-transformer/test.sh
md5: 92c4020b4c026f9b85fd38ddee1bd528
size: 313
- path: data/berger.csv
md5: 71b9738db6cb47e3af599da316e3b570
size: 60847
- path: models/config.json
md5: 3effd3229ade2ed52eeb90d252790bf5
size: 716
- path: models/merges.txt
md5: fb9c1e34b6999f3a062df6ed4a604957
size: 458459
- path: models/pytorch_model.bin
md5: 40379a0207d19e2a24e116e941d7d675
size: 333858922
- path: models/special_tokens_map.json
md5: 17bb9e090d1d3a775683aba3ba610591
size: 239
- path: models/tokenizer_config.json
md5: e1a3e947aa301aadc524ee29f0dbcc39
size: 1257
- path: models/training_args.bin
md5: 408c3f12467908cabb77ded5ce3490ed
size: 2159
- path: models/vocab.json
md5: ca70df26ed267d27a9edde9c5341f17b
size: 813062
- path: requirements.txt
md5: 29b4c5d66c523cec0712dbcdcced42bb
size: 21
outs:
- path: metrics/bugginess/transformer/berger/eval_results.txt
md5: 30da05826f977ee9b867560731091915
size: 144
bugginess_combine_labels_1151-commits:
cmd: python classifiers/bugginess-transformer/combine_labels.py labeled-datasets/1151-commits.labeled.csv
metrics/bugginess/transformer/1151-commits/assigned_labels.csv labeled-datasets/1151-commits.labeled.both.csv
&& echo "labeled-datasets/1151-commits.labeled.both.csv" >> .gitignore
deps:
- path: classifiers/bugginess-transformer/combine_labels.py
md5: 85cef7e65682e381b5e746d5a0901ec2
size: 720
- path: labeled-datasets/1151-commits.labeled.csv
md5: 70250f3b3489aed05065c35a0b859c00
size: 359755
- path: metrics/bugginess/transformer/1151-commits/assigned_labels.csv
md5: 527025d5fa114a28fa55eed7f4c10801
size: 6964
outs:
- path: labeled-datasets/1151-commits.labeled.both.csv
md5: f4d459e7b167fb0197dc49483eb2d2af
size: 366721
preprocess_200k-commits:
cmd: cp downloaded-data/200k-commits.csv data && echo "data/200k-commits.csv"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/200k-commits.csv
md5: 6ce10284e630c44110ffc483a7bb33df
size: 71402002
outs:
- path: data/200k-commits.csv
md5: 6ce10284e630c44110ffc483a7bb33df
size: 71402002
preprocess_200k-commits-issues:
cmd: cp downloaded-data/200k-commits-issues.csv data && echo "data/200k-commits-issues.csv"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/200k-commits-issues.csv
md5: da4b0d654f7ce1469857b9171a9647aa
size: 96908075
outs:
- path: data/200k-commits-issues.csv
md5: da4b0d654f7ce1469857b9171a9647aa
size: 96908075
preprocess_200k-commits-files:
cmd: 7z x downloaded-data/200k-commits-files.csv.7z -odata && echo "data/200k-commits-files.csv"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/200k-commits-files.csv.7z
md5: 56697c21cfd7bba5d0f68dcd0fbd86f0
size: 240190210
outs:
- path: data/200k-commits-files.csv
md5: bc989c140c305bed62a5a8b161883d3b
size: 2284439219
bugginess_apply_heuristics__heuristics_bugginess__200k-commits:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.bugginess
--dataset 200k-commits
deps:
- path: data/200k-commits-files.csv
md5: bc989c140c305bed62a5a8b161883d3b
size: 2284439219
- path: data/200k-commits-issues.csv
md5: da4b0d654f7ce1469857b9171a9647aa
size: 96908075
- path: data/200k-commits-manual-labels.csv
md5: 447bf23d38df7f7e3007dc35f70cab91
size: 1187
- path: data/200k-commits.csv
md5: 6ce10284e630c44110ffc483a7bb33df
size: 71402002
- path: heuristics/bugginess.py
md5: a55520b99cbaad572a26886b52e74652
size: 8900
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_200k-commits.pkl
md5: fa93c70bb58f111b85db389bd0c74ad1
size: 498669340
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_200k-commits.json
md5: 958e51f4d2c35451cf7575eaea15e7a6
size: 32
bugginess_label_dataset_200k-commits:
cmd: bohr porcelain label-dataset bugginess 200k-commits
deps:
- path: data/200k-commits.csv
md5: 6ce10284e630c44110ffc483a7bb33df
size: 71402002
- path: generated/bugginess/heuristic_matrix_200k-commits.pkl
md5: e4dd0ab575a03ed8b0a142176ac9ecf7
size: 500320716
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/bugginess/200k-commits.labeled.csv
md5: f014c7f09d9e2cb712d6fb232758ee9c
size: 73212497
preprocess_200k-commits-link-issues:
cmd: cp downloaded-data/200k-commits-link-issues.csv data && echo "data/200k-commits-link-issues.csv"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/200k-commits-link-issues.csv
md5: f75c8b5c7747abc8c2bd1b3b847dac18
size: 3005661
outs:
- path: data/200k-commits-link-issues.csv
md5: f75c8b5c7747abc8c2bd1b3b847dac18
size: 3005661
preprocess_200k-commits-manual-labels:
cmd: cp downloaded-data/200k-commits-manual-labels.csv data && echo "data/200k-commits-manual-labels.csv"
>> .gitignore && git add .gitignore
deps:
- path: downloaded-data/200k-commits-manual-labels.csv
md5: 447bf23d38df7f7e3007dc35f70cab91
size: 1187
outs:
- path: data/200k-commits-manual-labels.csv
md5: 447bf23d38df7f7e3007dc35f70cab91
size: 1187
bugginess_apply_heuristics__heuristics_manuallabels__herzig:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset herzig
deps:
- path: data/herzig.csv
md5: 69a17c08643aed84b874384a2a57c7ed
size: 1483281
- path: heuristics/manuallabels.py
md5: f338b2a285d76da97b3f53e9b167368a
size: 278
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_herzig.pkl
md5: 8e22aefcc1b79b3bc8c00ebd4503dca3
size: 42479
- path: metrics/bugginess/heuristics.manuallabels/heuristic_metrics_herzig.json
md5: 6881c30e66d12aec85d162df31e5e04d
size: 58
bugginess_apply_heuristics__heuristics_manuallabels__1151-commits:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset 1151-commits
deps:
- path: data/1151-commits.csv
md5: dd000fe19ba4aac9efa3a3856e2acc5e
size: 346306
- path: heuristics/manuallabels.py
md5: f338b2a285d76da97b3f53e9b167368a
size: 278
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_1151-commits.pkl
md5: 6586d8bf9010aff3be65327facde2edc
size: 9975
- path: metrics/bugginess/heuristics.manuallabels/heuristic_metrics_1151-commits.json
md5: 452fdb0e2c252999419be5771a3774cc
size: 58
bugginess_apply_heuristics__heuristics_manuallabels__200k-commits:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset 200k-commits
deps:
- path: data/200k-commits-files.csv
md5: bc989c140c305bed62a5a8b161883d3b
size: 2284439219
- path: data/200k-commits-issues.csv
md5: da4b0d654f7ce1469857b9171a9647aa
size: 96908075
- path: data/200k-commits-manual-labels.csv
md5: 447bf23d38df7f7e3007dc35f70cab91
size: 1187
- path: data/200k-commits.csv
md5: 6ce10284e630c44110ffc483a7bb33df
size: 71402002
- path: heuristics/manuallabels.py
md5: f338b2a285d76da97b3f53e9b167368a
size: 278
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_200k-commits.pkl
md5: 7febb1ec7e27a0b380e83a4c732946ab
size: 1651964
- path: metrics/bugginess/heuristics.manuallabels/heuristic_metrics_200k-commits.json
md5: b550e0fca5c368f3221fc11db0ba8a3e
size: 36
bugginess_apply_heuristics__heuristics_manuallabels__berger:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset berger
deps:
- path: data/berger.csv
md5: 126de41c9204a9e807e72406b1f9d631
size: 62247
- path: heuristics/manuallabels.py
md5: f338b2a285d76da97b3f53e9b167368a
size: 278
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_berger.pkl
md5: e93c0bbc779f1cf928251c4613ef5cc6
size: 3767
- path: metrics/bugginess/heuristics.manuallabels/heuristic_metrics_berger.json
md5: c2fefb5ddd23aee9e2705356b8d131c1
size: 59
preprocess_developer-labeled-commits:
cmd: data-preprocessing/developer_labeled.py
deps:
- path: data-preprocessing/developer_labeled.py
md5: d4c743a2b7723181d0284ea959fcbb99
size: 1488
- path: downloaded-data/developer-labeled-commits.zip
md5: 691ca4dc06f945d2d3019e20ceb5cd5c
size: 898671
outs:
- path: data/developer-labeled.csv
md5: db835bc072a7fbfb2fa947c1d5dbb1aa
size: 121817
bugginess_apply_heuristics__heuristics_bugginess__developer-labeled-commits:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.bugginess
--dataset developer-labeled-commits
deps:
- path: data/developer-labeled.csv
md5: db835bc072a7fbfb2fa947c1d5dbb1aa
size: 121817
- path: heuristics/bugginess.py
md5: a55520b99cbaad572a26886b52e74652
size: 8900
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_developer-labeled-commits.pkl
md5: fbbed1142254d6cd9b922290565a6313
size: 2348040
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_developer-labeled-commits.json
md5: 936006aa024d80022004b24caf729c4d
size: 73
preprocess_fine-grained-refactorings:
cmd: data-preprocessing/fine-grained-refactorings.py
deps:
- path: data-preprocessing/fine-grained-refactorings.py
md5: 4e32da7ede9b4d34c07d3e54d2672f21
size: 962
- path: downloaded-data/fine-grained-refactorings.zip
md5: 15d8fedcdef6f7f75df5c687c78cd791
size: 119657
outs:
- path: data/fine-grained-refactorings.csv
md5: 4b2fed41042a5ceb2e95738f35650beb
size: 358328
bugginess_apply_heuristics__heuristics_bugginess__fine-grained-refactorings:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.bugginess
--dataset fine-grained-refactorings
deps:
- path: data/fine-grained-refactorings.csv
md5: 4b2fed41042a5ceb2e95738f35650beb
size: 358328
- path: heuristics/bugginess.py
md5: a55520b99cbaad572a26886b52e74652
size: 8900
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.bugginess/heuristic_matrix_fine-grained-refactorings.pkl
md5: b9c7d542ac5cc3e3aa9a2114d794a0f8
size: 3708248
- path: metrics/bugginess/heuristics.bugginess/heuristic_metrics_fine-grained-refactorings.json
md5: 164d888c48bfb076fa97782a2aa703a8
size: 31
bugginess_apply_heuristics__heuristics_manuallabels__developer-labeled-commits:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset developer-labeled-commits
deps:
- path: data/developer-labeled.csv
md5: db835bc072a7fbfb2fa947c1d5dbb1aa
size: 121817
- path: heuristics/manuallabels.py
md5: f338b2a285d76da97b3f53e9b167368a
size: 278
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_developer-labeled-commits.pkl
md5: ff48bc7a29abb4802a76e4d4882edd86
size: 8503
- path: metrics/bugginess/heuristics.manuallabels/heuristic_metrics_developer-labeled-commits.json
md5: 6736afb27f1813d39b8769670a0d29c7
size: 58
bugginess_apply_heuristics__heuristics_manuallabels__fine-grained-refactorings:
cmd: bohr porcelain apply-heuristics bugginess --heuristic-group heuristics.manuallabels
--dataset fine-grained-refactorings
deps:
- path: data/fine-grained-refactorings.csv
md5: 4b2fed41042a5ceb2e95738f35650beb
size: 358328
- path: heuristics/manuallabels.py
md5: f338b2a285d76da97b3f53e9b167368a
size: 278
- path: labels.py
md5: 1404972881fc94fbf1039b625bd4ccc0
size: 1859
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: generated/bugginess/heuristics.manuallabels/heuristic_matrix_fine-grained-refactorings.pkl
md5: e1466fb17a3ce93547649ebd5d6e2210
size: 13007
- path: metrics/bugginess/heuristics.manuallabels/heuristic_metrics_fine-grained-refactorings.json
md5: 90747343662116155b09e2920b157b6c
size: 17
bugginess_label_dataset_developer-labeled-commits:
cmd: bohr porcelain label-dataset bugginess developer-labeled-commits
deps:
- path: data/developer-labeled.csv
md5: db835bc072a7fbfb2fa947c1d5dbb1aa
size: 121817
- path: generated/bugginess/heuristic_matrix_developer-labeled-commits.pkl
md5: 6ee04d7e28587b9134b30f6a3d9ef3d9
size: 2355957
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/bugginess/developer-labeled-commits.labeled.csv
md5: 665a9e5156e4d587143863774d122288
size: 133310
bugginess_label_dataset_fine-grained-refactorings:
cmd: bohr porcelain label-dataset bugginess fine-grained-refactorings
deps:
- path: data/fine-grained-refactorings.csv
md5: 4b2fed41042a5ceb2e95738f35650beb
size: 358328
- path: generated/bugginess/heuristic_matrix_fine-grained-refactorings.pkl
md5: e8c17b404564787dc5bdffdff4b75b18
size: 3720669
- path: generated/bugginess/label_model.pkl
md5: 27c72792ac98db20c3c5cbbc3768de40
size: 1875432
params:
bohr.json:
bohr_framework_version: 0.4.10
outs:
- path: labeled-datasets/bugginess/fine-grained-refactorings.labeled.csv
md5: d2dac7e9a367318b529b69ce29fb2ec3
size: 375865
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