ds4se/docs/mgmnt.prep.traceability.html

---

title: Traceability Preprocessing

keywords: fastai
sidebar: home_sidebar

summary: "This module comprises all preprocessing techniques for traceability tasks"
---
<!--

#################################################
### THIS FILE WAS AUTOGENERATED! DO NOT EDIT! ###
#################################################
# file to edit: nbs/25_mgmnt.prep.traceability.ipynb
# command to build the docs after a change: nbdev_build_docs

-->

<div class="container" id="notebook-container">
    
<div class="cell border-box-sizing code_cell rendered">

</div>
<div class="cell border-box-sizing code_cell rendered">

</div>
<div class="cell border-box-sizing code_cell rendered">

</div>
<div class="cell border-box-sizing code_cell rendered">

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_markdown rendered_html output_subarea ">
<h4 id="get_gt_links" class="doc_header"><code>get_gt_links</code><a href="https://github.com/ncoop57/ds4se/tree/master/ds4se/mgmnt/prep/traceability.py#L17" class="source_link" style="float:right">[source]</a></h4><blockquote><p><code>get_gt_links</code>(<strong><code>path</code></strong>, <strong><code>language</code></strong>)</p>
</blockquote>

</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">lang</span> <span class="o">=</span> <span class="s1">&#39;english&#39;</span>
<span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="s1">&#39;../benchmarking/traceability/testbeds&#39;</span><span class="p">);</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s2">&quot;*&quot;</span><span class="p">))</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>[PosixPath(&#39;../benchmarking/traceability/testbeds/translations&#39;),
 PosixPath(&#39;../benchmarking/traceability/testbeds/nltk&#39;),
 PosixPath(&#39;../benchmarking/traceability/testbeds/bpe&#39;),
 PosixPath(&#39;../benchmarking/traceability/testbeds/groundtruth&#39;)]</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">links_df</span> <span class="o">=</span> <span class="n">get_gt_links</span><span class="p">(</span><span class="n">path</span><span class="o">/</span><span class="s1">&#39;groundtruth&#39;</span><span class="o">/</span><span class="n">lang</span><span class="p">,</span> <span class="n">lang</span><span class="p">)</span>
<span class="n">links_df</span> <span class="o">=</span> <span class="n">links_df</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">links_df</span><span class="o">.</span><span class="n">sys</span> <span class="o">==</span> <span class="s1">&#39;libest&#39;</span><span class="p">]</span>
<span class="n">links_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_html rendered_html output_subarea output_execute_result">
<div>
<style scoped>
    .dataframe tbody tr th:only-of-type {
        vertical-align: middle;
    }

    .dataframe tbody tr th {
        vertical-align: top;
    }

    .dataframe thead th {
        text-align: right;
    }
</style>
<table border="1" class="dataframe">
  <thead>
    <tr style="text-align: right;">
      <th></th>
      <th>sys</th>
      <th>src_type</th>
      <th>trgt_type</th>
      <th>src_file</th>
      <th>trgt_file</th>
    </tr>
  </thead>
  <tbody>
    <tr>
      <th>0</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ31.txt</td>
      <td>est_server.c</td>
    </tr>
    <tr>
      <th>1</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ48.txt</td>
      <td>est_server_http.c</td>
    </tr>
    <tr>
      <th>2</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ16.txt</td>
      <td>est_server_http.c</td>
    </tr>
    <tr>
      <th>3</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ34.txt</td>
      <td>est_proxy.c</td>
    </tr>
    <tr>
      <th>4</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ6.txt</td>
      <td>est_client.c</td>
    </tr>
  </tbody>
</table>
</div>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">

</div>
<div class="cell border-box-sizing code_cell rendered">

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_markdown rendered_html output_subarea ">
<h4 id="get_non_gt" class="doc_header"><code>get_non_gt</code><a href="https://github.com/ncoop57/ds4se/tree/master/ds4se/mgmnt/prep/traceability.py#L50" class="source_link" style="float:right">[source]</a></h4><blockquote><p><code>get_non_gt</code>(<strong><code>path</code></strong>, <strong><code>language</code></strong>, <strong><code>gt</code></strong>, <strong><code>n</code></strong>=<em><code>1</code></em>)</p>
</blockquote>

</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="n">links_df</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">links_df</span><span class="o">.</span><span class="n">drop_duplicates</span><span class="p">())</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>(539, 539)</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">non_links_df</span> <span class="o">=</span> <span class="n">get_non_gt</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">lang</span><span class="p">,</span> <span class="n">links_df</span><span class="p">)</span>
<span class="n">non_links_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_html rendered_html output_subarea output_execute_result">
<div>
<style scoped>
    .dataframe tbody tr th:only-of-type {
        vertical-align: middle;
    }

    .dataframe tbody tr th {
        vertical-align: top;
    }

    .dataframe thead th {
        text-align: right;
    }
</style>
<table border="1" class="dataframe">
  <thead>
    <tr style="text-align: right;">
      <th></th>
      <th>sys</th>
      <th>src_type</th>
      <th>trgt_type</th>
      <th>src_file</th>
      <th>trgt_file</th>
    </tr>
  </thead>
  <tbody>
    <tr>
      <th>0</th>
      <td>libest</td>
      <td>req</td>
      <td>tc</td>
      <td>RQ32.txt</td>
      <td>us3496.c</td>
    </tr>
    <tr>
      <th>0</th>
      <td>libest</td>
      <td>req</td>
      <td>tc</td>
      <td>RQ23.txt</td>
      <td>us3496.c</td>
    </tr>
    <tr>
      <th>0</th>
      <td>libest</td>
      <td>req</td>
      <td>tc</td>
      <td>RQ48.txt</td>
      <td>us1060.c</td>
    </tr>
    <tr>
      <th>0</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ28.txt</td>
      <td>est.c</td>
    </tr>
    <tr>
      <th>0</th>
      <td>libest</td>
      <td>req</td>
      <td>tc</td>
      <td>RQ46.txt</td>
      <td>us1060.c</td>
    </tr>
  </tbody>
</table>
</div>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="n">non_links_df</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>191</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="n">non_links_df</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>134</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">links_df</span><span class="p">,</span> <span class="n">non_links_df</span><span class="p">])),</span> <span class="nb">len</span><span class="p">(</span><span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">links_df</span><span class="p">,</span> <span class="n">non_links_df</span><span class="p">])</span><span class="o">.</span><span class="n">drop_duplicates</span><span class="p">(</span><span class="n">keep</span> <span class="o">=</span> <span class="kc">False</span><span class="p">))</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>(673, 673)</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">links_df</span><span class="p">,</span> <span class="n">non_links_df</span><span class="p">]))</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">links_df</span><span class="p">,</span> <span class="n">non_links_df</span><span class="p">])</span><span class="o">.</span><span class="n">drop_duplicates</span><span class="p">(</span><span class="n">keep</span><span class="o">=</span><span class="kc">False</span><span class="p">))</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="s1">&#39;test_data&#39;</span><span class="p">);</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;*&#39;</span><span class="p">))</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>[PosixPath(&#39;test_data/LibEST_semeru_format&#39;),
 PosixPath(&#39;test_data/java_tokenizer-vocab.json&#39;),
 PosixPath(&#39;test_data/[libest-req2src-wmd].csv&#39;),
 PosixPath(&#39;test_data/test.model&#39;),
 PosixPath(&#39;test_data/[libest-sim-wmd].csv&#39;),
 PosixPath(&#39;test_data/.ipynb_checkpoints&#39;),
 PosixPath(&#39;test_data/test.vocab&#39;),
 PosixPath(&#39;test_data/text.txt&#39;),
 PosixPath(&#39;test_data/tst.csv&#39;),
 PosixPath(&#39;test_data/config_corpus&#39;),
 PosixPath(&#39;test_data/trn.csv&#39;),
 PosixPath(&#39;test_data/[libest-req2tc-wmd].csv&#39;),
 PosixPath(&#39;test_data/java_tokenizer-merges.txt&#39;),
 PosixPath(&#39;test_data/val.csv&#39;)]</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">req2src_wmd_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span>
    <span class="n">path</span><span class="o">/</span><span class="s1">&#39;[libest-req2src-wmd].csv&#39;</span><span class="p">,</span>
    <span class="n">header</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="n">names</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_file&#39;</span><span class="p">,</span> <span class="s1">&#39;wmd&#39;</span><span class="p">],</span>
    <span class="n">delimiter</span> <span class="o">=</span> <span class="s1">&#39; &#39;</span>
<span class="p">)</span>
<span class="n">req2src_wmd_df</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">req2src_wmd_df</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;-pre&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">))</span>
<span class="n">req2src_wmd_df</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">req2src_wmd_df</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;-pre&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">))</span>
<span class="n">req2src_wmd_df</span><span class="p">[</span><span class="s1">&#39;trgt_dtype&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;src&#39;</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">req2src_wmd_df</span><span class="p">)</span>
<span class="n">req2src_wmd_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_html rendered_html output_subarea output_execute_result">
<div>
<style scoped>
    .dataframe tbody tr th:only-of-type {
        vertical-align: middle;
    }

    .dataframe tbody tr th {
        vertical-align: top;
    }

    .dataframe thead th {
        text-align: right;
    }
</style>
<table border="1" class="dataframe">
  <thead>
    <tr style="text-align: right;">
      <th></th>
      <th>src_file</th>
      <th>trgt_file</th>
      <th>wmd</th>
      <th>trgt_dtype</th>
    </tr>
  </thead>
  <tbody>
    <tr>
      <th>0</th>
      <td>RQ58.txt</td>
      <td>est.h</td>
      <td>0.340562</td>
      <td>src</td>
    </tr>
    <tr>
      <th>1</th>
      <td>RQ23.txt</td>
      <td>est_server_http.c</td>
      <td>0.410977</td>
      <td>src</td>
    </tr>
    <tr>
      <th>2</th>
      <td>RQ28.txt</td>
      <td>est_server.h</td>
      <td>0.386474</td>
      <td>src</td>
    </tr>
    <tr>
      <th>3</th>
      <td>RQ53.txt</td>
      <td>est_locl.h</td>
      <td>0.447825</td>
      <td>src</td>
    </tr>
    <tr>
      <th>4</th>
      <td>RQ22.txt</td>
      <td>est_client_proxy.h</td>
      <td>0.532702</td>
      <td>src</td>
    </tr>
  </tbody>
</table>
</div>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">req2tc_wmd_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span>
    <span class="n">path</span><span class="o">/</span><span class="s1">&#39;[libest-req2tc-wmd].csv&#39;</span><span class="p">,</span>
    <span class="n">header</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="n">names</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_file&#39;</span><span class="p">,</span> <span class="s1">&#39;wmd&#39;</span><span class="p">],</span>
    <span class="n">delimiter</span> <span class="o">=</span> <span class="s1">&#39; &#39;</span>
<span class="p">)</span>
<span class="n">req2tc_wmd_df</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">req2tc_wmd_df</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;-pre&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">))</span>
<span class="n">req2tc_wmd_df</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">req2tc_wmd_df</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">Path</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;-pre&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">))</span>
<span class="n">req2tc_wmd_df</span><span class="p">[</span><span class="s1">&#39;trgt_dtype&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;tc&#39;</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">req2tc_wmd_df</span><span class="p">)</span>
<span class="n">req2tc_wmd_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_html rendered_html output_subarea output_execute_result">
<div>
<style scoped>
    .dataframe tbody tr th:only-of-type {
        vertical-align: middle;
    }

    .dataframe tbody tr th {
        vertical-align: top;
    }

    .dataframe thead th {
        text-align: right;
    }
</style>
<table border="1" class="dataframe">
  <thead>
    <tr style="text-align: right;">
      <th></th>
      <th>src_file</th>
      <th>trgt_file</th>
      <th>wmd</th>
      <th>trgt_dtype</th>
    </tr>
  </thead>
  <tbody>
    <tr>
      <th>0</th>
      <td>RQ11.txt</td>
      <td>us3496.c</td>
      <td>0.533299</td>
      <td>tc</td>
    </tr>
    <tr>
      <th>1</th>
      <td>RQ2.txt</td>
      <td>us1005.c</td>
      <td>0.334297</td>
      <td>tc</td>
    </tr>
    <tr>
      <th>2</th>
      <td>RQ45.txt</td>
      <td>us1060.c</td>
      <td>0.304404</td>
      <td>tc</td>
    </tr>
    <tr>
      <th>3</th>
      <td>RQ22.txt</td>
      <td>us895.c</td>
      <td>0.618677</td>
      <td>tc</td>
    </tr>
    <tr>
      <th>4</th>
      <td>RQ50.txt</td>
      <td>us1060.c</td>
      <td>0.234525</td>
      <td>tc</td>
    </tr>
  </tbody>
</table>
</div>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">wmd_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">req2src_wmd_df</span><span class="p">,</span> <span class="n">req2tc_wmd_df</span><span class="p">])</span><span class="o">.</span><span class="n">reset_index</span><span class="p">(</span><span class="n">drop</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span>
<span class="n">wmd_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_html rendered_html output_subarea output_execute_result">
<div>
<style scoped>
    .dataframe tbody tr th:only-of-type {
        vertical-align: middle;
    }

    .dataframe tbody tr th {
        vertical-align: top;
    }

    .dataframe thead th {
        text-align: right;
    }
</style>
<table border="1" class="dataframe">
  <thead>
    <tr style="text-align: right;">
      <th></th>
      <th>src_file</th>
      <th>trgt_file</th>
      <th>wmd</th>
      <th>trgt_dtype</th>
    </tr>
  </thead>
  <tbody>
    <tr>
      <th>0</th>
      <td>RQ58.txt</td>
      <td>est.h</td>
      <td>0.340562</td>
      <td>src</td>
    </tr>
    <tr>
      <th>1</th>
      <td>RQ23.txt</td>
      <td>est_server_http.c</td>
      <td>0.410977</td>
      <td>src</td>
    </tr>
    <tr>
      <th>2</th>
      <td>RQ28.txt</td>
      <td>est_server.h</td>
      <td>0.386474</td>
      <td>src</td>
    </tr>
    <tr>
      <th>3</th>
      <td>RQ53.txt</td>
      <td>est_locl.h</td>
      <td>0.447825</td>
      <td>src</td>
    </tr>
    <tr>
      <th>4</th>
      <td>RQ22.txt</td>
      <td>est_client_proxy.h</td>
      <td>0.532702</td>
      <td>src</td>
    </tr>
  </tbody>
</table>
</div>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">

</div>
<div class="cell border-box-sizing code_cell rendered">

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_markdown rendered_html output_subarea ">
<h4 id="add_wmd" class="doc_header"><code>add_wmd</code><a href="https://github.com/ncoop57/ds4se/tree/master/ds4se/mgmnt/prep/traceability.py#L81" class="source_link" style="float:right">[source]</a></h4><blockquote><p><code>add_wmd</code>(<strong><code>links_df</code></strong>, <strong><code>wmd_df</code></strong>)</p>
</blockquote>

</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">new_links_df</span> <span class="o">=</span> <span class="n">add_wmd</span><span class="p">(</span><span class="n">links_df</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">links_df</span><span class="o">.</span><span class="n">sys</span> <span class="o">==</span> <span class="s1">&#39;libest&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">copy</span><span class="p">(),</span> <span class="n">wmd_df</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="n">new_links_df</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">wmd_df</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">



<div class="output_text output_subarea output_execute_result">
<pre>(57, 200)</pre>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">new_links_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">


<div class="output_html rendered_html output_subarea output_execute_result">
<div>
<style scoped>
    .dataframe tbody tr th:only-of-type {
        vertical-align: middle;
    }

    .dataframe tbody tr th {
        vertical-align: top;
    }

    .dataframe thead th {
        text-align: right;
    }
</style>
<table border="1" class="dataframe">
  <thead>
    <tr style="text-align: right;">
      <th></th>
      <th>sys</th>
      <th>src_type</th>
      <th>trgt_type</th>
      <th>src_file</th>
      <th>trgt_file</th>
      <th>wmd</th>
    </tr>
  </thead>
  <tbody>
    <tr>
      <th>169</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ13.txt</td>
      <td>est_locl.h</td>
      <td>0.509546</td>
    </tr>
    <tr>
      <th>14</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ15.txt</td>
      <td>est_server.c</td>
      <td>0.405939</td>
    </tr>
    <tr>
      <th>37</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ17.txt</td>
      <td>est_locl.h</td>
      <td>0.484459</td>
    </tr>
    <tr>
      <th>46</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ18.txt</td>
      <td>est_server_http.c</td>
      <td>0.471456</td>
    </tr>
    <tr>
      <th>97</th>
      <td>libest</td>
      <td>req</td>
      <td>src</td>
      <td>RQ19.txt</td>
      <td>est_locl.h</td>
      <td>0.506730</td>
    </tr>
  </tbody>
</table>
</div>
</div>

</div>

</div>
</div>

</div>
<div class="cell border-box-sizing text_cell rendered"><div class="inner_cell">
<div class="text_cell_render border-box-sizing rendered_html">
<h1 id="SCRATCH-CODE">SCRATCH CODE<a class="anchor-link" href="#SCRATCH-CODE">&#182;</a></h1>
</div>
</div>
</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">check_row</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">row</span><span class="p">):</span>
    <span class="k">return</span> <span class="p">(</span><span class="n">df</span><span class="o">.</span><span class="n">src_file</span> <span class="o">==</span> <span class="n">row</span><span class="o">.</span><span class="n">src_file</span><span class="p">)</span> <span class="o">&amp;</span> <span class="p">(</span><span class="n">df</span><span class="o">.</span><span class="n">trgt_file</span> <span class="o">==</span> <span class="n">row</span><span class="o">.</span><span class="n">trgt_file</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">add_wmd</span><span class="p">(</span><span class="n">links_df</span><span class="p">,</span> <span class="n">wmd_df</span><span class="p">):</span>
    <span class="n">new_links_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">([],</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
        <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;src_type&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_type&#39;</span><span class="p">,</span> <span class="s1">&#39;src_file&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_file&#39;</span><span class="p">,</span> <span class="s1">&#39;wmd&#39;</span>
    <span class="p">])</span>
    <span class="k">for</span> <span class="n">_</span><span class="p">,</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">wmd_df</span><span class="o">.</span><span class="n">iterrows</span><span class="p">():</span>
        <span class="n">new_row</span> <span class="o">=</span> <span class="n">links_df</span><span class="o">.</span><span class="n">loc</span><span class="p">[(</span><span class="n">links_df</span><span class="o">.</span><span class="n">src_file</span> <span class="o">==</span> <span class="n">row</span><span class="o">.</span><span class="n">src_file</span><span class="p">)</span> <span class="o">&amp;</span> <span class="p">(</span><span class="n">links_df</span><span class="o">.</span><span class="n">trgt_file</span> <span class="o">==</span> <span class="n">row</span><span class="o">.</span><span class="n">trgt_file</span><span class="p">)]</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_row</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
            <span class="n">new_row</span><span class="p">[</span><span class="s1">&#39;wmd&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">row</span><span class="o">.</span><span class="n">wmd</span><span class="p">]</span>
            <span class="n">new_links_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">new_links_df</span><span class="p">,</span> <span class="n">new_row</span><span class="p">])</span>
    
    <span class="n">new_links_df</span> <span class="o">=</span> <span class="n">new_links_df</span><span class="o">.</span><span class="n">sort_values</span><span class="p">([</span><span class="s1">&#39;src_file&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_file&#39;</span><span class="p">])</span>
    <span class="k">return</span> <span class="n">new_links_df</span>
    
    
<span class="c1">#     keys = list(wmd_df.columns[:2].values)</span>
<span class="c1">#     i1 = links_df.set_index(keys).index</span>
<span class="c1">#     i2 = wmd_df.set_index(keys).index</span>
<span class="c1">#     links_df = links_df[~i1.isin(i2)].copy()</span>
<span class="c1">#     links_df = links_df.sort_values([&#39;src_file&#39;, &#39;trgt_file&#39;])</span>
    
<span class="c1">#     keys = list(links_df.columns[-2:].values)</span>
<span class="c1">#     i1 = wmd_df.set_index(keys).index</span>
<span class="c1">#     i2 = links_df.set_index(keys).index</span>
<span class="c1">#     wmd_df = wmd_df[~i1.isin(i2)].copy()</span>
<span class="c1">#     wmd_df = wmd_df.sort_values([&#39;src_file&#39;, &#39;trgt_file&#39;])</span>
    
<span class="c1">#     return links_df, wmd_df</span>
<span class="c1">#     wmd_df = wmd_df.loc[wmd_df.src_file.isin(links_df.src_file)].copy()</span>
<span class="c1">#     wmd_df = wmd_df.loc[wmd_df.trgt_file.isin(links_df.trgt_file)].copy()</span>
    
<span class="c1">#     links_df = links_df.loc[links_df.src_file.isin(wmd_df.src_file)].copy()</span>
<span class="c1">#     links_df = links_df.loc[links_df.trgt_file.isin(wmd_df.trgt_file)].copy()</span>
<span class="c1">#     links_df = links_df.sort_values([&#39;src_file&#39;, &#39;trgt_file&#39;])</span>
    
<span class="c1">#     return links_df, wmd_df</span>
    
    
<span class="c1">#     links_df[&#39;wmd&#39;] = [None] * len(links_df)</span>
<span class="c1">#     links_wmd_df = links_df.loc[links_df.src_file.isin(wmd_df.src_file)].copy()</span>
<span class="c1">#     links_wmd_df.mask(links_wmd_df.trgt_file.isin)</span>
<span class="c1"># #     links_wmd_df.loc[links_df.src_file.isin(wmd_df)].wmd = wmd_df.wmd.values</span>
<span class="c1">#     print(links_wmd_df.head())</span>
<span class="c1">#     pass</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">add_wmd</span><span class="p">(</span><span class="n">links_df</span><span class="p">,</span> <span class="n">wmd_df</span><span class="p">):</span>
<span class="c1">#     wmd_links_df = (links_df</span>
<span class="c1">#                     .loc[links_df.src_file.isin(wmd_df.src_file)]</span>
<span class="c1">#                     .copy()</span>
<span class="c1">#                    )</span>
<span class="c1">#     wmd_links_df = wmd_links_df.loc[wmd_links_df.trgt_file.isin(wmd_df.trgt_file)]</span>
<span class="c1">#     links_df</span>
    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">wmd_df</span><span class="o">.</span><span class="n">iterrows</span><span class="p">():</span>
        <span class="n">wmd_row</span> <span class="o">=</span> <span class="n">links_df</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">links_df</span><span class="o">.</span><span class="n">src_file</span> <span class="o">==</span> <span class="n">row</span><span class="o">.</span><span class="n">src_file</span><span class="p">]</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
        <span class="n">wmd_row</span> <span class="o">=</span> <span class="n">wmd_row</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">wmd_df</span><span class="o">.</span><span class="n">trgt_file</span> <span class="o">==</span> <span class="n">row</span><span class="o">.</span><span class="n">trgt_file</span><span class="p">]</span>
        <span class="nb">print</span><span class="p">(</span><span class="n">wmd_row</span><span class="p">)</span>
    
    <span class="k">return</span> <span class="n">wmd_links_df</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_non_gt</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">language</span><span class="p">,</span> <span class="n">gt</span><span class="p">,</span> <span class="n">n</span> <span class="o">=</span> <span class="mi">500</span><span class="p">):</span>
    <span class="n">links</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">gt</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">(),</span> <span class="n">gt</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">()))</span>
    <span class="n">syses</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">gt</span><span class="p">[</span><span class="s1">&#39;sys&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> <span class="o">+</span> <span class="n">gt</span><span class="p">[</span><span class="s1">&#39;sys&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">())</span>
    <span class="n">files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">gt</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> <span class="o">+</span> <span class="n">gt</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">())</span>
    <span class="n">files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">Path</span><span class="p">,</span> <span class="n">files</span><span class="p">))</span>
    <span class="n">pot_links</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">syses</span><span class="p">,</span> <span class="n">files</span><span class="p">))</span>
    <span class="n">random</span><span class="o">.</span><span class="n">shuffle</span><span class="p">(</span><span class="n">pot_links</span><span class="p">)</span>
    
    <span class="k">for</span> <span class="n">sys</span><span class="p">,</span> <span class="n">fn</span> <span class="ow">in</span> <span class="n">pot_links</span><span class="p">:</span>
        <span class="nb">print</span><span class="p">(</span><span class="n">sys</span><span class="p">,</span> <span class="n">fn</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">get_non_gt</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">lang</span><span class="p">,</span> <span class="n">links_df</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">

<div class="output_subarea output_stream output_stdout output_text">
<pre>libest us900.c

libest us748.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC36S1.txt
libest us900.c

itrust UC26S3.txt
itrust UC3S4.txt
itrust UC34S1.txt
itrust UC34E4.txt
itrust UC35S1.txt
itrust UC3S1.txt
libest us3612.c
libest us3496.c
itrust UC5S2.txt
libest est_server_http.c

libest RQ31.txt
libest us3512.c
itrust UC10S1.txt
libest us897.c
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest RQ57.txt
itrust src.edu.ncsu.csc.itrust.action.EmergencyReportAction.java
itrust UC2S2.txt
libest RQ22.txt
libest RQ46.txt
itrust UC36S3.txt
itrust src.edu.ncsu.csc.itrust.action.LabProcUAPAction.java
libest us1060.c

itrust src.edu.ncsu.csc.itrust.validate.PatientValidator.java
itrust UC36S2.txt
libest RQ26.txt
libest est_locl.h

itrust src.edu.ncsu.csc.itrust.validate.PersonnelValidator.java

libest est.c
itrust UC15S1.txt
itrust UC35S1.txt
itrust WebRoot.auth.patient.viewPrescriptionRecords.jsp
libest RQ36.txt
libest est_server_http.h

itrust UC26S2.txt
libest RQ24.txt
libest us893.c
itrust UC21E1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest est_server.c
itrust UC26S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java

libest RQ20.txt
itrust UC34E1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
itrust UC25E1.txt
itrust UC31S2.txt
itrust UC16.txt
itrust UC11E2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.ReferralDAO.java

libest RQ18.txt
libest us893.c
libest RQ48.txt
libest us893.c
itrust UC19E1.txt
itrust WebRoot.util.getUser.jsp
libest RQ48.txt
libest RQ57.txt
itrust UC13.txt
itrust UC2S2.txt
libest RQ33.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyRecordsAction.java
libest RQ56.txt
itrust src.edu.ncsu.csc.itrust.action.MonitorAdverseEventAction.java
libest RQ56.txt
libest RQ49.txt
libest RQ11.txt
libest est_locl.h
itrust UC17S2.txt
itrust WebRoot.auth.admin.editNDCodes.jsp
libest RQ22.txt
libest RQ25.txt
libest RQ35.txt
itrust UC32S2.txt
libest RQ49.txt
itrust src.edu.ncsu.csc.itrust.action.AddRemoteMonitoringDataAction.java
libest us898.c
libest us898.c
itrust UC17S3.txt
libest RQ38.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
libest RQ20.txt
libest RQ20.txt
itrust src.edu.ncsu.csc.itrust.action.MonitorAdverseEventAction.java
libest us899.c
libest est_client.c

libest RQ20.txt
itrust src.edu.ncsu.csc.itrust.action.UpdateHospitalListAction.java
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java

libest us3612.c
libest us3612.c
libest RQ11.txt
itrust UC34S5.txt
libest us748.c
libest RQ27.txt
libest RQ36.txt
itrust src.edu.ncsu.csc.itrust.action.EditOfficeVisitAction.java
libest us1864.c
itrust UC30E2.txt
itrust WebRoot.util.resetPassword.jsp
libest us1159.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

libest est_locl.h
itrust WebRoot.auth.patient.viewMyRecords.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.VisitRemindersDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
itrust WebRoot.auth.patient.viewMyRecords.jsp
libest us901.c
libest est_server.c
libest RQ38.txt
libest est_server.c
itrust UC16.txt
itrust UC29.txt
libest est_locl.h

itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest est_locl.h

itrust src.edu.ncsu.csc.itrust.dao.mysql.SurveyDAO.java

itrust UC18S1.txt
libest RQ17.txt
libest RQ33.txt
itrust UC28.txt
itrust src.edu.ncsu.csc.itrust.action.LabProcUAPAction.java
libest RQ56.txt
libest RQ8.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest us896.c
libest us899.c

itrust UC33S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.FamilyDAO.java
libest est.c
libest RQ8.txt
libest est_proxy.c
libest us1159.c

itrust UC18E2.txt
libest RQ33.txt
libest us1864.c
libest RQ41.txt
itrust UC25.txt
libest RQ33.txt
itrust UC19S3.txt
libest RQ50.txt
libest us3612.c
itrust UC6S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust UC31S2.txt
libest est_server_http.h

libest us3496.c
libest RQ8.txt
libest us898.c
libest RQ33.txt
libest us3612.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
itrust WebRoot.auth.patient.viewExpiredPrescriptionRecords.jsp
libest RQ8.txt
itrust UC34S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ56.txt
libest est_proxy.c
itrust UC38S2.txt
libest us898.c
libest RQ34.txt
itrust UC3E1.txt
itrust src.edu.ncsu.csc.itrust.validate.HospitalBeanValidator.java

libest RQ6.txt
itrust UC27S1.txt
libest us895.c
itrust UC9S1.txt
libest us1883.c
libest RQ18.txt
libest RQ16.txt
itrust src.edu.ncsu.csc.itrust.action.ChronicDiseaseRiskAction.java
itrust UC30E2.txt
libest RQ56.txt
libest RQ18.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java

libest est_client.c
libest RQ42.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java

itrust UC18E1.txt
itrust UC2S2.txt
itrust src.edu.ncsu.csc.itrust.action.DeclareHCPAction.java
libest us2174.c
itrust src.edu.ncsu.csc.itrust.risk.Type1DiabetesRisks.java
libest us3612.c
libest RQ34.txt
itrust UC4E1.txt
libest est_locl.h
libest est.c
libest RQ55.txt
libest RQ33.txt
itrust UC3S2.txt
libest RQ41.txt
libest est_server.c
itrust UC19S1.txt
libest est_client_http.c
libest RQ11.txt
libest est_client.c

itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest us898.c
libest RQ8.txt
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java
itrust UC32S2.txt
itrust WebRoot.util.getUser.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.HospitalsDAO.java
itrust WebRoot.auth.tester.home.jsp
libest RQ40.txt
itrust UC25.txt
itrust src.edu.ncsu.csc.itrust.action.AddHCPAction.java
libest RQ36.txt
libest RQ56.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.ICDCodesDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java
libest RQ49.txt
itrust UC30S1.txt
libest est_client.c
itrust src.edu.ncsu.csc.itrust.action.UpdateNDCodeListAction.java
libest us898.c
itrust UC8S2.txt
libest RQ25.txt
libest RQ47.txt
itrust UC33E1.txt
itrust UC34E1.txt
itrust UC3S3.txt
libest est_proxy.c
libest est_proxy.c
libest est_client.c
libest us898.c
itrust UC34S6.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.CPTCodesDAO.java

libest est_server.h

libest us899.c
itrust UC34S1.txt
itrust UC15S3.txt
itrust WebRoot.auth.hcp.viewMyMessages.jsp

libest us3512.c
libest us3512.c
libest us1159.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest RQ56.txt
libest est_ossl_util.c
itrust UC30E2.txt
itrust UC23S3.txt
libest RQ49.txt
libest RQ47.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyRecordsAction.java
libest RQ17.txt
libest RQ24.txt
libest RQ57.txt
libest RQ33.txt
libest RQ37.txt
libest est_server.h

libest est_locl.h
libest us1005.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.VisitRemindersDAO.java

itrust UC23S3.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AllergyDAO.java
itrust src.edu.ncsu.csc.itrust.validate.AddPersonnelValidator.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.CPTCodesDAO.java
libest us3496.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ50.txt
itrust src.edu.ncsu.csc.itrust.action.ViewPrescriptionRecordsAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

libest us1159.c
itrust src.edu.ncsu.csc.itrust.action.ViewMyMessagesAction.java
itrust WebRoot.auth.surveyResults.jsp

itrust UC16.txt
itrust WebRoot.auth.hcp-uap.editOfficeVisit.jsp
itrust UC33S1.txt
itrust UC37S2.txt
libest us901.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

libest RQ51.txt
libest RQ33.txt
itrust src.edu.ncsu.csc.itrust.action.ReportAdverseEventAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest est_server.c
libest est_server.c
libest us899.c

libest est_client.c
itrust UC4S2.txt
itrust UC30S4.txt
libest RQ51.txt
itrust src.edu.ncsu.csc.itrust.action.SearchUsersAction.java
libest RQ25.txt
libest us898.c
itrust UC23E1.txt
libest est_ossl_util.c
itrust WebRoot.auth.admin.hospitalListing.jsp
libest RQ55.txt
itrust UC3S2.txt
libest us1864.c
itrust src.edu.ncsu.csc.itrust.EmailUtil.java
itrust WebRoot.auth.patient.viewExpiredPrescriptionRecords.jsp
libest us894.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java
itrust UC19S1.txt
libest RQ33.txt
itrust UC6S3.txt
itrust UC4S3.txt
itrust UC2S1.txt
itrust UC33S2.txt
libest RQ25.txt
libest RQ23.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ36.txt
itrust UC30S2.txt
itrust UC26S3.txt
libest est_proxy.c
libest RQ20.txt
libest est_proxy.c
itrust UC26S3.txt
libest RQ55.txt
libest us2174.c
itrust UC6S2.txt
itrust UC6S2.txt
itrust UC18S2.txt
itrust UC17S1.txt
itrust UC36S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java

libest est_proxy.c
libest RQ34.txt
libest est_server_http.h

libest est.c
libest RQ35.txt
itrust UC4S1.txt
libest RQ29.txt
libest est_locl.h

itrust UC2S1.txt
libest us3612.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC11E2.txt
itrust UC31S1.txt
libest us897.c
libest RQ56.txt
libest est_client.c
libest RQ18.txt
itrust UC36S3.txt
libest RQ36.txt
libest est_server_http.c
libest RQ26.txt
itrust UC3S3.txt
itrust WebRoot.auth.admin.addHCP.jsp
libest us3612.c
libest RQ25.txt
libest est.c
libest us1883.c
libest us2174.c
libest us901.c
libest RQ55.txt
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java
itrust src.edu.ncsu.csc.itrust.action.DrugInteractionAction.java
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest us748.c
itrust UC10E2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest us894.c

libest est_locl.h

libest RQ8.txt
itrust src.edu.ncsu.csc.itrust.validate.MedicationBeanValidator.java
libest us896.c
libest RQ26.txt
libest est_locl.h
libest RQ55.txt
libest est.c
libest RQ47.txt
itrust UC36S3.txt
itrust UC26S3.txt
libest RQ4.txt
libest RQ38.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest us3612.c
libest us2174.c
itrust UC4E1.txt
libest RQ8.txt
itrust UC29.txt
libest us1005.c
libest us3612.c
libest est_locl.h

libest RQ29.txt
libest RQ18.txt
itrust WebRoot.auth.hcp-uap.getPrescriptionReport.jsp
libest us3512.c
libest RQ48.txt
itrust src.edu.ncsu.csc.itrust.action.GetVisitRemindersAction.java
libest us900.c

libest RQ47.txt
libest us894.c
libest us3496.c
libest us1864.c

itrust UC10E2.txt
itrust src.edu.ncsu.csc.itrust.action.ChangeSessionTimeoutAction.java
libest RQ50.txt
itrust WebRoot.auth.getPatientID.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java

libest RQ11.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.NDCodesDAO.java
itrust WebRoot.auth.hcp-uap.editOfficeVisit.jsp
libest est_server_http.c

libest us893.c
libest us3496.c
libest RQ22.txt
libest us897.c
itrust UC34S1.txt
libest est_server.c
itrust src.edu.ncsu.csc.itrust.EmailUtil.java

libest us3512.c
libest us893.c
libest us894.c
libest RQ33.txt
libest us899.c
libest est_client.c
libest RQ16.txt
libest RQ6.txt
libest us3612.c
libest RQ16.txt
libest RQ34.txt
itrust UC34S3.txt
libest RQ33.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust UC36S2.txt
libest us893.c
libest us898.c
itrust UC35S1.txt
libest est_locl.h

libest RQ8.txt
libest RQ41.txt
itrust UC21E1.txt
libest RQ8.txt
itrust UC6S2.txt
itrust UC19S1.txt
libest RQ37.txt
libest RQ37.txt
libest RQ34.txt
libest RQ38.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
itrust UC30S4.txt
itrust WebRoot.util.resetPassword.jsp
libest RQ51.txt
itrust UC33S2.txt
libest us748.c
itrust UC21S1.txt
libest est_server.c

itrust src.edu.ncsu.csc.itrust.validate.ProcedureBeanValidator.java

libest est_client.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.HealthRecordsDAO.java
itrust UC10S1.txt
libest RQ4.txt
itrust UC35S2.txt
itrust UC13.txt
libest us895.c
itrust UC34S2.txt
itrust UC34E1.txt
libest RQ39.txt
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java
libest RQ16.txt
itrust UC15S4.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyMessagesAction.java
libest est_server_http.c
libest RQ34.txt
libest RQ51.txt
itrust WebRoot.auth.admin.sessionTimeout.jsp
libest est_client.c
itrust src.edu.ncsu.csc.itrust.action.SendMessageAction.java
itrust UC4S2.txt
libest RQ38.txt
libest RQ26.txt
libest us897.c
libest RQ41.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyAccessLogAction.java
libest RQ56.txt
libest RQ21.txt
libest us1864.c
libest RQ34.txt
libest us895.c
libest RQ20.txt
libest RQ4.txt
libest RQ15.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java
itrust UC30S1.txt
libest us893.c
libest RQ48.txt
libest us898.c
libest us1005.c
itrust UC15S1.txt
itrust WebRoot.util.getUser.jsp
libest us899.c
itrust UC26S2.txt
libest RQ20.txt
itrust UC33E2.txt
itrust src.edu.ncsu.csc.itrust.validate.AddPatientValidator.java

itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust UC21E2.txt
libest RQ29.txt
itrust UC9S1.txt
itrust WebRoot.auth.patient.viewAccessLog.jsp
libest us901.c
itrust WebRoot.util.getUser.jsp
libest RQ34.txt
itrust UC10S1.txt
libest RQ49.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

itrust src.edu.ncsu.csc.itrust.action.ViewMyRemoteMonitoringListAction.java
itrust src.edu.ncsu.csc.itrust.validate.HospitalBeanValidator.java

libest us895.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java

libest RQ33.txt
itrust WebRoot.auth.hcp.visitReminders.jsp
libest RQ19.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.VisitRemindersDAO.java
itrust UC23S4.txt
itrust WebRoot.auth.patient.viewVisitedHCPs.jsp
libest us1159.c
itrust WebRoot.auth.patient.reportAdverseEvent.jsp
itrust src.edu.ncsu.csc.itrust.server.SessionTimeoutListener.java

itrust src.edu.ncsu.csc.itrust.action.ViewMyRecordsAction.java
libest est_client.c
libest us748.c
libest RQ18.txt
itrust UC23S4.txt
libest RQ55.txt
libest us2174.c
itrust UC27S2.txt
libest us1060.c
libest RQ55.txt
itrust UC10S1.txt
itrust UC37S2.txt
libest RQ47.txt
libest us893.c
libest est_locl.h
itrust UC30E1.txt
libest est_server_http.c
libest us899.c
libest us3612.c
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust src.edu.ncsu.csc.itrust.action.EditOfficeVisitAction.java
itrust UC38S2.txt
libest us3496.c
libest us1159.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ38.txt
libest RQ37.txt
libest RQ31.txt
itrust UC6S1.txt
itrust UC35S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

libest us901.c

itrust WebRoot.auth.uap.addTelemedicineData.jsp
itrust UC18S2.txt
itrust WebRoot.auth.patient.viewPrescriptionRecords.jsp
itrust WebRoot.util.getUser.jsp
libest est_locl.h

itrust UC4S3.txt
libest RQ32.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyRecordsAction.java
libest RQ32.txt
libest RQ36.txt
itrust UC6S1.txt
libest RQ13.txt
libest us897.c
libest RQ35.txt
libest est_client.c

itrust UC28.txt
itrust UC3S1.txt
itrust UC23S3.txt
itrust UC30E1.txt
itrust UC19E2.txt
libest us898.c
libest RQ37.txt
libest RQ29.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
itrust UC34E2.txt
libest est_ossl_util.c
itrust UC36S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC37S1.txt
libest RQ8.txt
libest RQ57.txt
libest us1883.c
itrust UC15E1.txt
itrust WebRoot.auth.patient.addTelemedicineData.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC32S2.txt
itrust UC15E1.txt
libest est_proxy.c
itrust UC26E1.txt
libest RQ4.txt
libest RQ19.txt
libest RQ41.txt
itrust UC37S2.txt
itrust UC26S3.txt
libest us895.c
libest us1159.c

libest RQ49.txt
itrust src.edu.ncsu.csc.itrust.action.ViewReportAction.java
libest RQ34.txt
libest RQ34.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java
itrust UC35S2.txt
libest RQ50.txt
libest RQ13.txt
itrust src.edu.ncsu.csc.itrust.action.EditPatientAction.java
libest us3512.c
libest us4020.c
libest RQ33.txt
itrust UC26S2.txt
libest us1159.c
itrust UC8S2.txt
itrust src.edu.ncsu.csc.itrust.action.EditPHRAction.java
libest us2174.c
itrust UC15S3.txt
itrust UC34S5.txt
libest us1005.c
itrust UC21S1.txt
libest RQ37.txt
libest RQ25.txt
itrust UC34S6.txt
libest us3612.c
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust UC30S5.txt
libest RQ47.txt
libest RQ28.txt
libest us895.c
itrust WebRoot.auth.patient.addTelemedicineData.jsp
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest RQ38.txt
libest us899.c

libest RQ34.txt
itrust WebRoot.auth.admin.editLOINCCodes.jsp
libest RQ29.txt
libest RQ51.txt
libest RQ8.txt
libest RQ55.txt
libest RQ47.txt
libest RQ11.txt
libest RQ38.txt
libest RQ37.txt
libest us893.c
libest us1005.c
itrust src.edu.ncsu.csc.itrust.action.ViewPrescriptionRecordsAction.java
libest RQ14.txt
itrust src.edu.ncsu.csc.itrust.action.MonitorAdverseEventAction.java
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest est_server.c
libest RQ34.txt
itrust UC3E2.txt
itrust UC15S2.txt
libest us2174.c
itrust UC6S1.txt
itrust UC36S2.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest us2174.c
itrust UC25.txt
libest us893.c
itrust UC34S5.txt
libest RQ48.txt
libest us3496.c
libest us895.c
libest us2174.c
libest RQ26.txt
libest RQ26.txt
libest us1159.c
itrust UC4S3.txt
itrust UC30S3.txt
libest RQ25.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust src.edu.ncsu.csc.itrust.validate.RemoteMonitoringDataBeanValidator.java

itrust UC36S3.txt
libest us893.c
itrust UC3S3.txt
itrust UC26E1.txt
libest est_locl.h

itrust src.edu.ncsu.csc.itrust.action.DrugInteractionAction.java
itrust UC34S4.txt
libest est_proxy.c
itrust UC35S1.txt
libest RQ22.txt
libest RQ6.txt
libest RQ36.txt
libest est_client.c
libest est_server.c
libest est_server.c
itrust WebRoot.util.getUser.jsp
itrust src.edu.ncsu.csc.itrust.action.SurveyAction.java
itrust src.edu.ncsu.csc.itrust.action.EditPersonnelAction.java
libest RQ18.txt
libest RQ13.txt
itrust UC23E2.txt
itrust WebRoot.auth.hcp-uap.chronicDiseaseRisks.jsp
libest RQ13.txt
itrust UC36S1.txt
itrust UC36S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.HealthRecordsDAO.java
itrust UC30S5.txt
itrust UC3S5.txt
libest us3612.c
libest est_locl.h
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java

itrust UC37S3.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java
libest est_server.c

itrust UC4S2.txt
libest est.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC21S1.txt
libest RQ34.txt
libest RQ50.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest RQ38.txt
itrust WebRoot.auth.hcp-uap.addPatient.jsp
libest RQ24.txt
itrust UC32E1.txt
itrust UC4S1.txt
libest RQ57.txt
itrust UC35S1.txt
libest est_client_http.c
libest RQ36.txt
itrust UC37S3.txt
libest RQ36.txt
itrust UC13E1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java

libest us1159.c
libest RQ4.txt
libest RQ56.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.HospitalsDAO.java

libest RQ24.txt
itrust UC11S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest us1159.c
libest us748.c
libest RQ33.txt
libest est_ossl_util.c
itrust UC11S2.txt
libest us3612.c
itrust UC3E1.txt
libest RQ8.txt
libest us893.c
libest us899.c

libest us1005.c
itrust src.edu.ncsu.csc.itrust.action.UpdateLOINCListAction.java
libest us4020.c
itrust UC21E2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ35.txt
libest RQ18.txt
libest RQ51.txt
itrust UC17S1.txt
libest RQ6.txt
libest us4020.c
libest us3512.c
itrust UC26S1.txt
itrust UC30S1.txt
itrust src.edu.ncsu.csc.itrust.action.ViewVisitedHCPsAction.java
libest est_proxy.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.SurveyResultDAO.java

itrust UC13E1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ51.txt
libest est_server.c
libest us1864.c
libest RQ7.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC11S1.txt
libest us748.c
itrust UC3S3.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
itrust UC18S1.txt
itrust UC8S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.DrugInteractionDAO.java

libest RQ40.txt
libest RQ55.txt
itrust UC23S3.txt
itrust src.edu.ncsu.csc.itrust.action.UpdateICDCodeListAction.java
itrust WebRoot.auth.hcp.hcpConsultation.jsp
itrust src.edu.ncsu.csc.itrust.action.SendMessageAction.java
libest RQ19.txt
libest us895.c
itrust src.edu.ncsu.csc.itrust.action.EditOfficeVisitAction.java
libest us1864.c
libest us899.c

itrust UC4E1.txt
libest us2174.c
libest RQ48.txt
libest RQ26.txt
itrust WebRoot.auth.hcp-uap.editOfficeVisit.jsp
libest RQ47.txt
libest RQ22.txt
libest RQ48.txt
itrust UC23S4.txt
libest est_proxy.c
itrust UC26S3.txt
itrust UC35S1.txt
itrust UC2S2.txt
itrust UC11S2.txt
libest RQ16.txt
itrust WebRoot.auth.hcp.visitReminders.jsp

itrust WebRoot.util.getUser.jsp
libest RQ56.txt
libest us1060.c
itrust UC21E2.txt
libest RQ15.txt
itrust src.edu.ncsu.csc.itrust.action.SetSecurityQuestionAction.java
libest us3512.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java

libest RQ20.txt
libest us1883.c
libest RQ27.txt
libest us4020.c
libest est.c
itrust src.edu.ncsu.csc.itrust.action.ReportAdverseEventAction.java
libest est_ossl_util.h

itrust UC17S1.txt
libest RQ29.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java
libest us1883.c
libest RQ20.txt
libest RQ32.txt
libest RQ41.txt
itrust UC34S3.txt
libest RQ47.txt
itrust WebRoot.util.getUser.jsp
libest RQ29.txt
itrust src.edu.ncsu.csc.itrust.validate.SecurityQAValidator.java
libest RQ37.txt
libest RQ26.txt
libest us4020.c
libest us4020.c
itrust WebRoot.auth.patient.viewVisitedHCPs.jsp
itrust UC23S3.txt
libest est_server.c

itrust UC17S3.txt
libest RQ37.txt
itrust UC26E2.txt
libest us4020.c
libest us1005.c
libest us3612.c
itrust UC4S2.txt
libest RQ32.txt
libest RQ37.txt
libest RQ34.txt
itrust UC19E1.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest RQ26.txt
itrust WebRoot.auth.hcp-er.emergencyReport.jsp
libest RQ25.txt
libest RQ36.txt
libest us1883.c
libest us1883.c
libest RQ6.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.DrugInteractionDAO.java

itrust UC15E1.txt
libest us899.c

libest RQ38.txt
libest us2174.c
libest est_server.h

libest RQ26.txt
libest RQ49.txt
libest us900.c

itrust UC26E2.txt
itrust UC27S1.txt
libest RQ50.txt
libest RQ51.txt
itrust UC34S6.txt
libest us896.c
itrust WebRoot.auth.hcp.hcpConsultation.jsp

itrust UC27S2.txt
itrust UC27S2.txt
libest us896.c
libest est_locl.h
libest us1159.c
libest est_client.c
libest us4020.c
itrust UC13.txt
itrust src.edu.ncsu.csc.itrust.action.ReportAdverseEventAction.java

itrust UC30S4.txt
libest RQ38.txt
itrust UC10E1.txt
itrust UC10S2.txt
itrust UC16.txt
itrust UC4S2.txt
libest us3612.c
itrust src.edu.ncsu.csc.itrust.action.ViewSurveyResultAction.java
itrust UC19S3.txt
libest us748.c
itrust UC12.txt
libest RQ50.txt
libest us893.c
libest RQ35.txt
itrust UC35S2.txt
libest RQ56.txt
itrust UC16.txt
libest us4020.c
libest us748.c
itrust WebRoot.auth.admin.editNDCInteractions.jsp
libest RQ37.txt
libest est_locl.h
libest RQ35.txt
libest RQ49.txt
libest us1005.c

itrust src.edu.ncsu.csc.itrust.action.ViewMyMessagesAction.java
itrust UC29.txt
libest RQ16.txt
libest RQ41.txt
itrust WebRoot.auth.hcp.viewPrescriptionRenewalNeeds.jsp
libest est_server.c
libest est_client.c

itrust UC26S2.txt
libest RQ38.txt
itrust src.edu.ncsu.csc.itrust.EmailUtil.java

libest us3512.c
libest us1060.c
libest RQ36.txt
itrust UC11S1.txt
libest RQ51.txt
itrust UC30S4.txt
libest us1005.c
itrust WebRoot.auth.pha.adverseEventDetails.jsp
libest RQ56.txt
libest RQ56.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.ReportRequestDAO.java
itrust UC38S2.txt
libest est_client.c
itrust UC9S1.txt
itrust UC13.txt
libest RQ4.txt
libest RQ19.txt
libest RQ25.txt
itrust UC36S1.txt
libest RQ37.txt
libest us3512.c
libest RQ46.txt
libest RQ26.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java
libest RQ26.txt
libest us1864.c
itrust WebRoot.util.getUser.jsp
libest us1883.c
itrust WebRoot.auth.hcp-uap.viewMyReportRequests.jsp
libest us1005.c
libest RQ50.txt
libest RQ18.txt
libest RQ40.txt
libest est_server.c
itrust src.edu.ncsu.csc.itrust.action.ViewVisitedHCPsAction.java
libest us894.c
libest est_server.h

itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ47.txt
libest est_locl.h

libest us748.c
libest RQ4.txt
itrust UC34S2.txt
itrust UC35S2.txt
libest us3612.c
libest RQ33.txt
libest est_server.h

libest RQ4.txt
libest us2174.c
libest est_proxy.c
libest us893.c
libest est_client_http.c
libest est_client.c
itrust UC23S3.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust WebRoot.auth.patient.home.jsp
libest us1159.c
libest RQ34.txt
itrust UC24.txt
libest RQ22.txt
itrust UC26S2.txt
libest RQ4.txt
libest RQ22.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
itrust UC36S3.txt
itrust src.edu.ncsu.csc.itrust.action.UpdateCPTCodeListAction.java
libest us4020.c
itrust src.edu.ncsu.csc.itrust.risk.Type2DiabetesRisks.java
itrust UC23E1.txt
itrust UC23E2.txt
libest RQ35.txt
libest est_client.c
libest us896.c
libest us901.c

libest est.c
libest RQ22.txt
itrust UC4S4.txt
libest est_locl.h

itrust UC36S1.txt
libest est_server_http.c
libest RQ13.txt
itrust WebRoot.auth.getPatientID.jsp
libest RQ40.txt
itrust UC25.txt
libest RQ50.txt
libest RQ13.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ16.txt
libest RQ56.txt
itrust src.edu.ncsu.csc.itrust.action.EditHealthHistoryAction.java
itrust UC15S2.txt
libest us4020.c
libest est.c
itrust src.edu.ncsu.csc.itrust.action.LabProcUAPAction.java
libest us4020.c
libest us898.c
libest est_client.c

libest us900.c

itrust WebRoot.auth.pha.monitorAdverseEvents.jsp
libest RQ18.txt
libest RQ48.txt
itrust UC15S4.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
itrust UC33S2.txt
itrust src.edu.ncsu.csc.itrust.action.EditMonitoringListAction.java
libest RQ33.txt
itrust WebRoot.auth.hcp-uap.editOfficeVisit.jsp
itrust UC30S2.txt
itrust src.edu.ncsu.csc.itrust.action.LabProcHCPAction.java
itrust WebRoot.auth.hcp.LabProcHCP.jsp
itrust WebRoot.auth.hcp.editPatientList.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.HealthRecordsDAO.java

libest us3512.c
itrust UC29.txt
libest RQ29.txt
libest est_server.c
libest RQ46.txt
libest us897.c
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest us748.c
itrust UC33S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust UC10S1.txt
itrust UC15S1.txt
libest us1159.c
itrust UC24.txt
libest RQ40.txt
libest us900.c

itrust UC34S3.txt
itrust UC11S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest RQ23.txt
itrust UC10E2.txt
libest RQ11.txt
itrust UC17S1.txt
libest RQ29.txt
libest us1864.c
itrust UC12.txt
libest RQ25.txt
libest RQ36.txt
itrust UC23S3.txt
libest RQ34.txt
libest RQ5.txt
libest RQ42.txt
libest us748.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

libest est_server.h

itrust UC23S3.txt
itrust UC34S6.txt
itrust UC1S1.txt
libest est_server.c
libest us896.c
itrust src.edu.ncsu.csc.itrust.validate.RemoteMonitoringDataBeanValidator.java

libest est_server.h
libest RQ51.txt
libest us1005.c
libest RQ55.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.ReportRequestDAO.java

libest us899.c
libest RQ51.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java

libest est_server_http.h

libest us898.c
libest est_client.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java

itrust UC11E2.txt
libest us898.c
itrust UC11S1.txt
itrust src.edu.ncsu.csc.itrust.action.MyDiagnosisAction.java
libest est_proxy.c
itrust WebRoot.auth.getPatientID.jsp
libest RQ48.txt
itrust WebRoot.util.getUser.jsp
libest us1005.c
libest us3512.c
itrust WebRoot.auth.admin.editCPTProcedureCodes.jsp
libest RQ33.txt
libest us901.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ33.txt
libest RQ11.txt
libest us3512.c
libest RQ34.txt
libest us1159.c
itrust UC15S3.txt
libest est_server.h

itrust UC34S5.txt
libest est_server.h

libest us748.c
itrust UC10S1.txt
libest us900.c

libest us900.c

itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ56.txt
libest RQ36.txt
itrust UC10E1.txt
libest us1159.c
itrust src.edu.ncsu.csc.itrust.action.ViewMyRemoteMonitoringListAction.java
libest RQ36.txt
itrust UC11S2.txt
itrust WebRoot.auth.pha.adverseEventDetails.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

itrust UC28.txt
libest RQ41.txt
itrust UC26S2.txt
libest RQ50.txt
libest RQ26.txt
itrust UC32S2.txt
libest RQ47.txt
libest RQ6.txt
libest est_client.c
itrust UC34S4.txt
itrust WebRoot.auth.patient.reportAdverseEvent.jsp
itrust UC3S5.txt
itrust src.edu.ncsu.csc.itrust.action.AddRemoteMonitoringDataAction.java
itrust WebRoot.auth.hcp.viewMyMessages.jsp
libest us1159.c
libest est_locl.h

itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest us3612.c
libest RQ26.txt
itrust src.edu.ncsu.csc.itrust.action.ReportAdverseEventAction.java

libest RQ5.txt
itrust UC3S4.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest est_locl.h
itrust UC11S1.txt
libest us896.c
libest RQ8.txt
libest us895.c
libest est_locl.h

libest est_proxy.c
libest RQ25.txt
libest RQ8.txt
itrust UC37S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AllergyDAO.java

libest RQ33.txt
libest us899.c
libest us899.c
libest us1864.c
itrust WebRoot.util.getUser.jsp
libest RQ16.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust src.edu.ncsu.csc.itrust.risk.RiskChecker.java
libest RQ48.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java
itrust WebRoot.util.getUser.jsp
libest est_client_http.c
libest est_server.h

itrust src.edu.ncsu.csc.itrust.action.ViewPatientOfficeVisitHistoryAction.java
itrust UC34S4.txt
libest RQ26.txt
libest RQ37.txt
itrust UC9S1.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyReportRequestsAction.java
libest RQ51.txt
libest RQ47.txt
libest est_client.c
libest RQ40.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.SurveyResultDAO.java
libest RQ14.txt
libest est_client_http.c
libest RQ13.txt
itrust src.edu.ncsu.csc.itrust.action.EditPatientAction.java
itrust WebRoot.auth.getPatientID.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

libest RQ20.txt
libest RQ36.txt
libest us748.c
libest RQ35.txt
libest RQ41.txt
libest us748.c
libest us1159.c
itrust UC19S2.txt
libest RQ51.txt
libest RQ8.txt
libest RQ6.txt
libest est_proxy.c
itrust UC35S2.txt
libest RQ18.txt
libest RQ34.txt
libest est_server_http.c

libest est_server_http.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ8.txt
itrust UC3S2.txt
libest RQ48.txt
itrust WebRoot.util.getUser.jsp
libest us897.c
libest RQ20.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ42.txt
libest est_server.c
itrust UC11E1.txt
libest us894.c
libest us1005.c
libest us748.c
itrust UC30S2.txt
libest est_client.c
libest RQ29.txt
libest RQ38.txt
libest RQ35.txt
libest RQ4.txt
libest RQ29.txt
libest RQ20.txt
itrust UC34E3.txt
itrust UC1S1.txt
libest RQ4.txt
libest RQ6.txt
itrust UC30S3.txt
itrust src.edu.ncsu.csc.itrust.validate.LOINCBeanValidator.java
itrust UC4S3.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust WebRoot.auth.getPatientID.jsp
libest RQ48.txt
itrust src.edu.ncsu.csc.itrust.EmailUtil.java
libest RQ26.txt
libest RQ22.txt
itrust UC36S2.txt
libest RQ32.txt
itrust src.edu.ncsu.csc.itrust.EmailUtil.java
itrust WebRoot.auth.hcp.sendMessage.jsp
libest us896.c
itrust UC30S3.txt
libest RQ23.txt
itrust src.edu.ncsu.csc.itrust.action.EditOfficeVisitAction.java
libest RQ11.txt
itrust UC36S1.txt
itrust UC34E1.txt
itrust UC28.txt
itrust UC33S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AccessDAO.java
itrust UC18S1.txt
itrust UC34S6.txt
libest us748.c
libest us1883.c
libest est.c
libest RQ13.txt
libest RQ6.txt
libest us900.c

libest est_proxy.c
libest RQ48.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.HealthRecordsDAO.java
itrust UC6S1.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyReportRequestsAction.java
libest us3612.c
itrust src.edu.ncsu.csc.itrust.action.ReferralManagementAction.java
libest est_server.c
itrust src.edu.ncsu.csc.itrust.action.GetVisitRemindersAction.java
libest RQ46.txt
itrust src.edu.ncsu.csc.itrust.action.SendMessageAction.java
itrust UC29.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
itrust UC36S3.txt
libest est_server.c
itrust UC8S2.txt
libest RQ56.txt
itrust UC26S2.txt
libest est_client.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest us3512.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest est_server.c
itrust WebRoot.auth.patient.viewLHCP.jsp

itrust UC30E2.txt
libest RQ33.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.ReportRequestDAO.java

libest RQ46.txt
libest RQ5.txt
libest RQ20.txt
libest RQ26.txt
libest RQ55.txt
libest us4020.c
itrust UC10S1.txt
libest us893.c
libest us898.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest est_server.c
libest RQ51.txt
libest us3512.c
libest RQ47.txt
libest est_locl.h
itrust src.edu.ncsu.csc.itrust.dao.mysql.ICDCodesDAO.java
libest RQ34.txt
libest RQ17.txt
libest RQ26.txt
itrust UC34S5.txt
libest RQ38.txt
itrust UC35S2.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest RQ17.txt
itrust WebRoot.auth.patient.sendMessage.jsp
libest RQ36.txt
itrust WebRoot.util.getUser.jsp
itrust UC26S2.txt
libest est.c
itrust WebRoot.auth.getPatientID.jsp
libest RQ35.txt
libest us4020.c
libest us896.c
libest RQ34.txt
libest us893.c
libest us893.c
libest RQ36.txt
itrust UC5S1.txt
libest RQ41.txt
libest RQ40.txt
itrust UC18S2.txt
libest RQ35.txt
libest RQ20.txt
itrust src.edu.ncsu.csc.itrust.validate.DiagnosisBeanValidator.java
libest RQ22.txt
itrust UC19E1.txt
itrust WebRoot.util.getUser.jsp
itrust UC29.txt
libest RQ34.txt
itrust UC13E1.txt
libest est_client.c
libest RQ50.txt
libest RQ56.txt
libest RQ22.txt
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java

libest RQ7.txt
libest us1159.c
libest us3512.c
libest RQ40.txt
libest RQ8.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java
libest est_server.c
itrust UC34S4.txt
libest us899.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.FamilyDAO.java
itrust UC26S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java

libest us898.c
libest RQ51.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest us894.c
libest us1159.c
itrust UC10S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
itrust UC6S3.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.ReferralDAO.java

itrust UC3S5.txt
libest est_proxy.c
libest est_client_http.c
libest us896.c
itrust WebRoot.auth.getPatientID.jsp
libest RQ50.txt
libest RQ17.txt
libest est_server.h
libest est_locl.h
libest est_locl.h

itrust src.edu.ncsu.csc.itrust.dao.mysql.ReportRequestDAO.java
libest RQ51.txt
libest us897.c
libest us1159.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
libest RQ55.txt
libest RQ50.txt
libest est_client.c
itrust WebRoot.auth.getPatientID.jsp
libest est_client_http.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest est_server.c
libest RQ8.txt
libest RQ49.txt
libest us893.c
itrust WebRoot.auth.hcp.viewAdditionalInfo.jsp
libest us1005.c
libest RQ55.txt
itrust WebRoot.auth.admin.editICDCodes.jsp
libest us899.c

itrust src.edu.ncsu.csc.itrust.dao.mysql.ReferralDAO.java
itrust src.edu.ncsu.csc.itrust.EmailUtil.java

itrust UC38S1.txt
libest us1159.c
libest RQ22.txt
itrust UC3S4.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java
itrust WebRoot.auth.patient.viewMyMessages.jsp
libest RQ34.txt
libest us3612.c
libest us901.c
libest us3512.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AllergyDAO.java
libest us4020.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java

itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest est_server_http.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

itrust UC6S3.txt
libest RQ35.txt
itrust WebRoot.auth.hcp-uap.viewReport.jsp
itrust UC21S1.txt
libest RQ38.txt
libest est_server.c
libest us900.c

libest RQ33.txt
libest est_server_http.h

itrust UC9S1.txt
libest RQ8.txt
itrust UC36S3.txt
itrust UC26E1.txt
itrust UC3E2.txt
libest est_server_http.c
libest RQ15.txt
libest RQ42.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AllergyDAO.java
itrust UC36S2.txt
libest RQ20.txt
itrust WebRoot.util.getUser.jsp
libest us2174.c
itrust src.edu.ncsu.csc.itrust.action.UpdateHospitalListAction.java
itrust UC37S2.txt
itrust src.edu.ncsu.csc.itrust.EmailUtil.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.HealthRecordsDAO.java

libest us4020.c
itrust WebRoot.auth.getPatientID.jsp
libest RQ40.txt
libest est_client_http.c
itrust WebRoot.auth.hcp-uap.getPrescriptionReport.jsp
itrust src.edu.ncsu.csc.itrust.action.ReferralManagementAction.java
itrust UC30S3.txt
itrust UC33S1.txt
libest RQ32.txt
libest RQ8.txt
itrust UC25.txt
libest us1005.c
itrust src.edu.ncsu.csc.itrust.action.EditRepresentativesAction.java
libest est.c
itrust UC38S1.txt
itrust UC34S1.txt
libest RQ36.txt
libest us1005.c
itrust UC15S3.txt
libest us748.c
itrust UC33S1.txt
libest RQ9.txt
itrust UC34E4.txt
itrust src.edu.ncsu.csc.itrust.action.ViewVisitedHCPsAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

libest est_server.c
itrust UC3S1.txt
itrust WebRoot.auth.patient.viewVisitedHCPs.jsp
itrust WebRoot.auth.hcp.addUAP.jsp
itrust src.edu.ncsu.csc.itrust.dao.mysql.HospitalsDAO.java

libest us3512.c
itrust UC34S5.txt
libest us899.c
itrust UC8S1.txt
libest RQ31.txt
itrust WebRoot.auth.patient.viewPrescriptionRecords.jsp

libest us896.c
libest us748.c
libest us1864.c
libest est_server.c
libest RQ34.txt
itrust src.edu.ncsu.csc.itrust.action.AddPatientAction.java
libest RQ38.txt
libest est_locl.h
libest us3496.c
libest RQ29.txt
libest RQ25.txt
itrust UC23E1.txt
libest RQ29.txt
itrust UC30S3.txt
libest us748.c
libest est_server_http.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ32.txt
libest RQ39.txt
libest RQ35.txt
libest RQ40.txt
libest us3496.c
libest RQ51.txt
libest us898.c
itrust UC19S2.txt
libest RQ35.txt
libest us898.c
libest us1159.c
libest us896.c
libest RQ37.txt
itrust UC37S3.txt
libest us1159.c
itrust UC35S2.txt
itrust UC30S2.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust UC23S1.txt
itrust UC34S1.txt
libest est_client.c
itrust WebRoot.util.getUser.jsp
libest us748.c
libest RQ22.txt
itrust UC30S4.txt
itrust UC2S1.txt
libest est_proxy.c
libest RQ11.txt
libest RQ26.txt
libest RQ51.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java

itrust src.edu.ncsu.csc.itrust.action.EditOfficeVisitAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.LOINCDAO.java

itrust WebRoot.auth.hcp.monitorPatients.jsp
itrust WebRoot.auth.hcp.viewPrescriptionRenewalNeeds.jsp

libest est_client.c

libest est_locl.h
libest RQ35.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest est.c
itrust WebRoot.auth.patient.survey.jsp
itrust src.edu.ncsu.csc.itrust.action.EditRepresentativesAction.java
itrust UC15E1.txt
libest us1005.c
itrust UC4S1.txt
libest RQ4.txt
libest RQ51.txt
libest est_locl.h
libest est_client.c
itrust UC34S1.txt
itrust UC19S2.txt
libest RQ15.txt
itrust WebRoot.auth.patient.editMyDemographics.jsp
libest RQ26.txt
itrust UC23S1.txt
itrust src.edu.ncsu.csc.itrust.action.ViewPrescriptionRecordsAction.java
libest RQ39.txt
libest us1883.c
itrust UC31S1.txt
itrust UC23S3.txt
libest us895.c
libest RQ18.txt
libest RQ29.txt
itrust UC31S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
itrust src.edu.ncsu.csc.itrust.action.GetVisitRemindersAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest est.c
libest est_client.c

itrust WebRoot.auth.hcp-uap.viewPatientOfficeVisitHistory.jsp
libest us896.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AllergyDAO.java
libest us1864.c
libest RQ13.txt
itrust UC11S2.txt
libest RQ8.txt
libest RQ35.txt
itrust UC30S2.txt
libest us900.c

libest RQ40.txt
libest us898.c
libest RQ8.txt
libest RQ6.txt
libest us3512.c
libest RQ34.txt
libest est_proxy.c
itrust src.edu.ncsu.csc.itrust.action.ViewMyRemoteMonitoringListAction.java
libest us893.c
libest RQ26.txt
libest RQ55.txt
itrust UC16.txt
itrust UC26E1.txt
itrust WebRoot.auth.patient.viewMyRecords.jsp
libest us897.c
libest est.c
libest us895.c
itrust UC23S3.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
itrust src.edu.ncsu.csc.itrust.risk.HeartDiseaseRisks.java
libest RQ26.txt
itrust WebRoot.util.getUser.jsp
libest RQ33.txt
libest us900.c

libest est_client.c
libest est_server.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.NDCodesDAO.java

itrust WebRoot.auth.getPatientID.jsp
itrust UC26S4.txt
itrust WebRoot.util.getUser.jsp
libest RQ36.txt
itrust UC26S2.txt
libest us895.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java

libest RQ6.txt
libest RQ26.txt
itrust UC23S1.txt
itrust UC36S1.txt
libest RQ55.txt
libest us4020.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java
itrust UC33S1.txt
itrust WebRoot.auth.patient.viewMyMessages.jsp
itrust WebRoot.auth.admin.editNDCodes.jsp
itrust UC30S5.txt
libest us897.c
libest us4020.c
itrust UC17S2.txt
libest RQ57.txt
itrust UC23E2.txt
libest us1883.c
itrust WebRoot.auth.hcp-uap.editBasicHealth.jsp
libest RQ26.txt
itrust UC1E1.txt
libest est_client.c
itrust UC4S1.txt
itrust WebRoot.auth.patient.myDiagnoses.jsp
libest RQ35.txt
libest RQ6.txt
libest us898.c
itrust src.edu.ncsu.csc.itrust.action.SetSecurityQuestionAction.java
libest RQ35.txt
libest est_client.c
libest RQ51.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
itrust UC23S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest us896.c
libest RQ39.txt
itrust src.edu.ncsu.csc.itrust.action.SendMessageAction.java
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest us900.c

libest us748.c
libest us901.c

libest est.c
itrust UC21S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest RQ18.txt
itrust UC23E2.txt
libest us3496.c
libest us899.c
libest us3512.c
libest RQ49.txt
itrust src.edu.ncsu.csc.itrust.action.ViewMyAccessLogAction.java
libest RQ34.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.LOINCDAO.java
itrust WebRoot.auth.admin.hospitalListing.jsp
libest est_client.c
itrust UC15S1.txt
itrust WebRoot.auth.hcp.reply.jsp
libest RQ32.txt
libest RQ35.txt
libest RQ29.txt
libest RQ26.txt
libest RQ49.txt
libest RQ18.txt
itrust UC24.txt
libest RQ13.txt
libest RQ11.txt
libest RQ51.txt
itrust UC34S5.txt
libest est_client.c
itrust UC26S4.txt
libest RQ32.txt
libest RQ50.txt
libest us1159.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java

libest us894.c
itrust UC15S4.txt
libest RQ22.txt
itrust UC15S2.txt
itrust UC3S4.txt
libest RQ33.txt
itrust UC11E1.txt
libest est_server_http.c

libest est_client.c

libest RQ40.txt
libest RQ11.txt
libest est_client.c
libest us901.c
itrust WebRoot.auth.patient.viewAccessLog.jsp
itrust UC16.txt
libest est_server.c
libest us1864.c
libest us901.c
libest RQ4.txt
itrust UC35S1.txt
libest us898.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java
itrust UC10S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java

itrust src.edu.ncsu.csc.itrust.EmailUtil.java
libest RQ35.txt
libest us900.c

libest RQ20.txt
libest RQ29.txt
itrust src.edu.ncsu.csc.itrust.action.SendMessageAction.java
libest us897.c
itrust src.edu.ncsu.csc.itrust.action.AddUAPAction.java
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest est_proxy.c
itrust UC23S3.txt
itrust WebRoot.auth.hcp.hcpConsultation.jsp
libest est_client.c
itrust UC30S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
libest RQ40.txt
libest us897.c
itrust WebRoot.auth.hcp-uap.updateLabProc.jsp
itrust WebRoot.auth.surveyResults.jsp
itrust UC1S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.OfficeVisitDAO.java
libest RQ32.txt
libest us748.c
itrust UC3S4.txt
libest us1005.c

itrust UC27S1.txt
libest RQ56.txt
libest RQ49.txt
libest us900.c

itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java

libest RQ6.txt
itrust WebRoot.auth.uap.getPatientMonitorList.jsp
itrust WebRoot.util.getUser.jsp
libest est_locl.h

libest RQ8.txt
libest us3612.c
libest est.c
libest RQ35.txt
libest RQ25.txt
itrust UC19E2.txt
itrust src.edu.ncsu.csc.itrust.action.ViewPrescriptionRenewalNeedsAction.java
itrust UC10S1.txt
libest us1883.c
itrust src.edu.ncsu.csc.itrust.action.ViewMyReportRequestsAction.java
libest us895.c
libest us899.c
libest RQ34.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest est_server.h

itrust UC11E1.txt
libest us900.c

itrust UC33S2.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.LabProcedureDAO.java

itrust UC30S1.txt
itrust UC19S1.txt
itrust src.edu.ncsu.csc.itrust.action.AddRemoteMonitoringDataAction.java
libest RQ51.txt
itrust UC31S1.txt
libest RQ16.txt
itrust WebRoot.auth.hcp.hcpConsultation.jsp

libest us1883.c
itrust UC34S1.txt
itrust UC38S2.txt
libest us4020.c
libest us3496.c
itrust UC15S2.txt
libest est_server.c
libest est_proxy.c
itrust UC2S1.txt
libest RQ6.txt
itrust UC8S1.txt
itrust UC6S2.txt
libest RQ26.txt
itrust WebRoot.auth.patient.home.jsp
libest us893.c
libest RQ32.txt
itrust src.edu.ncsu.csc.itrust.EmailUtil.java
libest us2174.c
libest us899.c
libest RQ55.txt
libest RQ20.txt
libest est.c
libest RQ29.txt
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java

libest RQ51.txt
itrust UC4S1.txt
libest RQ55.txt
libest RQ51.txt
itrust UC26E2.txt
libest est.c
itrust UC6S2.txt
libest est_ossl_util.c
itrust WebRoot.auth.pha.monitorAdverseEvents.jsp
libest RQ29.txt
libest RQ20.txt
libest us3612.c
libest RQ33.txt
itrust UC15S4.txt
itrust UC26E2.txt
libest us1159.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java

libest us1005.c
libest RQ29.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java

libest RQ20.txt
libest RQ56.txt
libest us899.c

libest est_server.h
itrust UC34S3.txt
itrust src.edu.ncsu.csc.itrust.EmailUtil.java
libest RQ56.txt
libest RQ55.txt
itrust UC4S1.txt
itrust UC1S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.DrugInteractionDAO.java
itrust src.edu.ncsu.csc.itrust.EmailUtil.java

itrust WebRoot.auth.getPatientID.jsp
libest RQ32.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.MessageDAO.java
libest est_proxy.c
itrust WebRoot.auth.hcp-uap.updateLabProc.jsp
itrust UC2S1.txt
itrust UC26S3.txt
libest us1060.c
libest RQ36.txt
libest RQ11.txt
libest RQ57.txt
libest RQ13.txt
libest RQ42.txt
libest est_client.c
libest us899.c
libest us3512.c
itrust UC29.txt
libest RQ22.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PersonnelDAO.java
libest RQ55.txt
itrust UC38S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

libest est_server.c
libest us895.c
libest us897.c
itrust UC37S1.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.TransactionDAO.java

libest us893.c
itrust UC19E2.txt
libest us3512.c
libest RQ55.txt
itrust UC35S2.txt
libest us899.c

itrust src.edu.ncsu.csc.itrust.dao.mysql.DrugInteractionDAO.java
itrust UC10E1.txt
libest RQ37.txt
libest est_proxy.c
libest us3512.c
libest est_server.c
itrust WebRoot.auth.pha.adverseEventDetails.jsp
libest RQ45.txt
libest est_server.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java
libest RQ6.txt
libest RQ33.txt
itrust UC30E1.txt
libest est_server_http.c
libest est_server.c
libest us1864.c
itrust src.edu.ncsu.csc.itrust.dao.mysql.AdverseEventDAO.java

libest est_server_http.c
libest RQ38.txt
itrust WebRoot.util.getUser.jsp
libest RQ25.txt
libest us3512.c
libest us1005.c
libest RQ11.txt
itrust UC30S5.txt
libest RQ41.txt
itrust src.edu.ncsu.csc.itrust.action.GetUserNameAction.java
libest RQ55.txt
libest RQ26.txt
libest est_server.c
libest RQ14.txt
libest est_proxy.c
libest est_proxy.c
itrust src.edu.ncsu.csc.itrust.action.EditPatientAction.java
libest est.c
libest RQ51.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.PatientDAO.java

libest RQ36.txt
itrust UC9S1.txt
libest us899.c
libest us897.c
itrust src.edu.ncsu.csc.itrust.EmailUtil.java

libest RQ49.txt
itrust UC30S2.txt
libest us898.c
itrust src.edu.ncsu.csc.itrust.EmailUtil.java
libest RQ16.txt
libest us896.c
itrust UC1S1.txt
itrust src.edu.ncsu.csc.itrust.action.ResetPasswordAction.java
itrust WebRoot.auth.hcp.home.jsp
libest RQ41.txt
libest est_server_http.c
libest RQ36.txt
libest us898.c
itrust WebRoot.util.resetPassword.jsp
itrust UC21E1.txt
libest us1883.c
itrust UC2E2.txt
libest est.c
itrust UC30S4.txt
itrust UC3E1.txt
itrust src.edu.ncsu.csc.itrust.action.ViewExpiredPrescriptionsAction.java
libest RQ8.txt
libest RQ19.txt
libest RQ19.txt
libest RQ49.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.AllergyDAO.java
libest RQ15.txt
itrust src.edu.ncsu.csc.itrust.dao.mysql.RemoteMonitoringDAO.java

itrust src.edu.ncsu.csc.itrust.dao.mysql.AuthDAO.java
libest us1005.c
</pre>
</div>
</div>

</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_non_gt</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">language</span><span class="p">,</span> <span class="n">gt</span><span class="p">):</span>
    <span class="n">all_non_links</span> <span class="o">=</span> <span class="p">[]</span>
    
    <span class="n">existing_links</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">link</span><span class="p">)</span> <span class="k">for</span> <span class="n">link</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">gt</span><span class="p">[</span><span class="s1">&#39;from_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">(),</span> <span class="n">gt</span><span class="p">[</span><span class="s1">&#39;to_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">())]</span>
    <span class="n">bpe_files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;**/*.bpe&#39;</span><span class="p">))</span>
    <span class="n">random</span><span class="o">.</span><span class="n">shuffle</span><span class="p">(</span><span class="n">bpe_files</span><span class="p">)</span>
    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">bpe_files</span><span class="p">[:</span><span class="mi">500</span><span class="p">]:</span>
        <span class="n">sys</span> <span class="o">=</span> <span class="n">i</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span>
        <span class="n">from_type</span> <span class="o">=</span> <span class="n">i</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span>
        <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">from_type</span><span class="p">)</span> <span class="o">!=</span> <span class="s1">&#39;req&#39;</span><span class="p">:</span> <span class="k">continue</span>
        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
            <span class="n">i_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
        <span class="n">random</span><span class="o">.</span><span class="n">shuffle</span><span class="p">(</span><span class="n">bpe_files</span><span class="p">)</span>
        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="n">bpe_files</span><span class="p">[:</span><span class="mi">500</span><span class="p">]:</span>
            <span class="k">if</span> <span class="n">i</span> <span class="o">==</span> <span class="n">j</span><span class="p">:</span> <span class="k">continue</span>
            <span class="k">if</span> <span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">i</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">j</span><span class="o">.</span><span class="n">name</span><span class="p">])</span> <span class="ow">in</span> <span class="n">existing_links</span><span class="p">:</span> <span class="k">continue</span>
            <span class="n">to_type</span> <span class="o">=</span> <span class="n">j</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span>
            <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">to_type</span><span class="p">)</span> <span class="o">==</span> <span class="s1">&#39;req&#39;</span><span class="p">:</span> <span class="k">continue</span>
<span class="c1">#             if from_type == to_type: continue</span>
            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">j</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                <span class="n">j_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
            <span class="n">all_non_links</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">sys</span><span class="p">,</span> <span class="n">from_type</span><span class="p">,</span> <span class="n">to_type</span><span class="p">,</span> <span class="n">i</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">j</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">i_content</span><span class="p">,</span> <span class="n">j_content</span><span class="p">])</span>
    
    <span class="n">all_non_links</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">all_non_links</span><span class="p">,</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
        <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;from_type&#39;</span><span class="p">,</span> <span class="s1">&#39;to_type&#39;</span><span class="p">,</span> <span class="s1">&#39;from_file&#39;</span><span class="p">,</span> <span class="s1">&#39;to_file&#39;</span><span class="p">,</span> <span class="s1">&#39;from_doc&#39;</span><span class="p">,</span> <span class="s1">&#39;to_doc&#39;</span>
    <span class="p">])</span>
    <span class="k">return</span> <span class="n">all_non_links</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_ground_truth</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">language</span><span class="p">):</span>
    <span class="n">all_links</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">([],</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
        <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;from_type&#39;</span><span class="p">,</span> <span class="s1">&#39;to_type&#39;</span><span class="p">,</span> <span class="s1">&#39;from_file&#39;</span><span class="p">,</span> <span class="s1">&#39;to_file&#39;</span><span class="p">,</span> <span class="s1">&#39;from_doc&#39;</span><span class="p">,</span> <span class="s1">&#39;to_doc&#39;</span>
    <span class="p">])</span>
    <span class="k">for</span> <span class="n">fn</span> <span class="ow">in</span> <span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;*.txt&#39;</span><span class="p">):</span>
        <span class="n">content</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">fn</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
        <span class="n">content</span> <span class="o">=</span> <span class="n">content</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
        
        <span class="n">sys</span><span class="p">,</span> <span class="n">from_type</span><span class="p">,</span> <span class="n">to_type</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">content</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="n">content</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span>
        
        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fn</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
            <span class="n">links</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
            
        <span class="k">for</span> <span class="n">link</span> <span class="ow">in</span> <span class="n">links</span><span class="p">:</span>
            <span class="n">link</span> <span class="o">=</span> <span class="n">link</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
            <span class="n">root</span><span class="p">,</span> <span class="n">children</span> <span class="o">=</span> <span class="n">link</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">link</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
            <span class="n">root</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">with_suffix</span><span class="p">(</span><span class="s1">&#39;.bpe&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">name</span>
            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">parent</span><span class="o">/</span><span class="s1">&#39;bpe&#39;</span><span class="o">/</span><span class="n">language</span><span class="o">/</span><span class="n">sys</span><span class="o">/</span><span class="n">from_type</span><span class="o">/</span><span class="n">root</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                <span class="n">root_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
            <span class="n">children</span> <span class="o">=</span> <span class="p">[</span><span class="n">Path</span><span class="p">(</span><span class="n">child</span><span class="p">)</span><span class="o">.</span><span class="n">with_suffix</span><span class="p">(</span><span class="s1">&#39;.bpe&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">name</span> <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">]</span>
            <span class="n">children</span> <span class="o">=</span> <span class="p">[</span><span class="n">Path</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">child</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">2</span><span class="p">:]))</span> <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">]</span>
            <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">:</span>
                <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">parent</span><span class="o">/</span><span class="s1">&#39;bpe&#39;</span><span class="o">/</span><span class="n">language</span><span class="o">/</span><span class="n">sys</span><span class="o">/</span><span class="n">to_type</span><span class="o">/</span><span class="n">child</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                    <span class="n">child_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
                <span class="n">all_links</span> <span class="o">=</span> <span class="n">all_links</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s1">&#39;sys&#39;</span><span class="p">:</span> <span class="n">sys</span><span class="p">,</span>
                                              <span class="s1">&#39;from_type&#39;</span><span class="p">:</span> <span class="n">from_type</span><span class="p">,</span>
                                              <span class="s1">&#39;to_type&#39;</span><span class="p">:</span> <span class="n">to_type</span><span class="p">,</span>
                                              <span class="s1">&#39;from_file&#39;</span><span class="p">:</span> <span class="n">root</span><span class="p">,</span>
                                              <span class="s1">&#39;to_file&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">child</span><span class="p">),</span>
                                              <span class="s1">&#39;from_doc&#39;</span><span class="p">:</span> <span class="n">root_content</span><span class="p">,</span>
                                              <span class="s1">&#39;to_doc&#39;</span><span class="p">:</span> <span class="n">child_content</span><span class="p">},</span>
                                             <span class="n">ignore_index</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
            
    <span class="k">return</span> <span class="n">all_links</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_non_gt</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">language</span><span class="p">,</span> <span class="n">gt</span><span class="p">,</span> <span class="n">n</span> <span class="o">=</span> <span class="mf">0.5</span><span class="p">):</span>
    <span class="n">non_links_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">([],</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
        <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;src_type&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_type&#39;</span><span class="p">,</span> <span class="s1">&#39;src_file&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_file&#39;</span>
    <span class="p">])</span>
    
    <span class="n">srcs</span> <span class="o">=</span> <span class="n">gt</span><span class="p">[[</span><span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;src_type&#39;</span><span class="p">,</span> <span class="s1">&#39;src_file&#39;</span><span class="p">]]</span>
    <span class="n">trgts</span> <span class="o">=</span> <span class="n">gt</span><span class="p">[[</span><span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_type&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_file&#39;</span><span class="p">]]</span>
    
    <span class="n">syses</span> <span class="o">=</span> <span class="p">[]</span>
    <span class="n">src_types</span><span class="p">,</span> <span class="n">trgt_types</span> <span class="o">=</span> <span class="p">[],</span> <span class="p">[]</span>
    <span class="n">all_srcs</span><span class="p">,</span> <span class="n">all_trgts</span> <span class="o">=</span> <span class="p">[],</span> <span class="p">[]</span>
    
    <span class="c1"># Sample from the dataframe to introduce randomness and reduce number of links</span>
    <span class="n">srcs</span> <span class="o">=</span> <span class="n">srcs</span><span class="o">.</span><span class="n">sample</span><span class="p">(</span><span class="n">frac</span> <span class="o">=</span> <span class="n">n</span><span class="p">)</span>
    <span class="n">trgts</span> <span class="o">=</span> <span class="n">trgts</span><span class="o">.</span><span class="n">sample</span><span class="p">(</span><span class="n">frac</span> <span class="o">=</span> <span class="n">n</span><span class="p">)</span>
    <span class="k">for</span> <span class="p">(</span><span class="n">src_id</span><span class="p">,</span> <span class="n">src_row</span><span class="p">),</span> <span class="p">(</span><span class="n">trgt_id</span><span class="p">,</span> <span class="n">trgt_row</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">srcs</span><span class="o">.</span><span class="n">iterrows</span><span class="p">(),</span> <span class="n">trgts</span><span class="o">.</span><span class="n">iterrows</span><span class="p">()):</span>
        <span class="k">if</span> <span class="n">src_id</span> <span class="o">==</span> <span class="n">trgt_id</span> <span class="ow">or</span> <span class="n">src_row</span><span class="p">[</span><span class="s1">&#39;sys&#39;</span><span class="p">]</span> <span class="o">!=</span> <span class="n">trgt_row</span><span class="p">[</span><span class="s1">&#39;sys&#39;</span><span class="p">]:</span> <span class="k">continue</span>
        
        <span class="n">row</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">([[</span>
            <span class="n">src_row</span><span class="p">[</span><span class="s1">&#39;sys&#39;</span><span class="p">],</span> <span class="n">src_row</span><span class="p">[</span><span class="s1">&#39;src_type&#39;</span><span class="p">],</span>
            <span class="n">trgt_row</span><span class="p">[</span><span class="s1">&#39;trgt_type&#39;</span><span class="p">],</span> <span class="n">src_row</span><span class="p">[</span><span class="s1">&#39;src_file&#39;</span><span class="p">],</span>
            <span class="n">trgt_row</span><span class="p">[</span><span class="s1">&#39;trgt_file&#39;</span><span class="p">]]],</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
            <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;src_type&#39;</span><span class="p">,</span> <span class="s1">&#39;trgt_type&#39;</span><span class="p">,</span> <span class="s1">&#39;src_file&#39;</span><span class="p">,</span>
            <span class="s1">&#39;trgt_file&#39;</span>
        <span class="p">])</span>
        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">gt</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">gt</span><span class="p">,</span> <span class="n">row</span><span class="p">])</span><span class="o">.</span><span class="n">drop_duplicates</span><span class="p">()):</span>
            <span class="n">non_links_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">non_links_df</span><span class="p">,</span> <span class="n">row</span><span class="p">])</span>
        
        
<span class="c1">#         new_row = pd.DataFrame([[</span>
<span class="c1">#             src_row[&#39;sys&#39;], src_row[&#39;src_type&#39;],</span>
<span class="c1">#             trgt_row[&#39;trgt_type&#39;], src_row[&#39;src_file&#39;],</span>
<span class="c1">#             trgt_row[&#39;trgt_file&#39;]]</span>
<span class="c1">#                             ], columns = [</span>
<span class="c1">#         &#39;sys&#39;, &#39;src_type&#39;, &#39;trgt_type&#39;, &#39;src_file&#39;, &#39;trgt_file&#39;</span>
<span class="c1">#     ])</span>
        
<span class="c1">#         if len(list(filter(lambda row: row[1].equals(new_row), gt.iterrows()))) &gt; 0:</span>
<span class="c1">#             print(&quot;matched...&quot;)</span>
<span class="c1">#         if len(gt) == len(pd.concat([gt, new_row]).drop_duplicates()):</span>
<span class="c1">#             print(&quot;matched...&quot;)</span>
<span class="c1">#         else: non_links_df = pd.concat([non_links_df, new_row])</span>
<span class="c1">#             print(len(gt), len(gt.append(new_row, ignore_index = True).drop_duplicates()))</span>

<span class="c1">#         for i, row in gt.iterrows():</span>
<span class="c1">#             if row.equals(new_row):</span>
<span class="c1">#                 print(&quot;matched...&quot;)</span>
<span class="c1">#         syses.append(src_row[&#39;sys&#39;])</span>
<span class="c1">#         src_types.append(src_row[&#39;src_type&#39;])</span>
<span class="c1">#         trgt_types.append(trgt_row[&#39;trgt_type&#39;])</span>
        
<span class="c1">#         all_srcs.append(src_row[&#39;src_file&#39;])</span>
<span class="c1">#         all_trgts.append(trgt_row[&#39;trgt_file&#39;])</span>
    
<span class="c1">#     all_non_links = set(zip(syses, src_types, trgt_types, all_srcs, all_trgts))</span>
<span class="c1">#     non_links_df = pd.DataFrame(all_non_links, columns = [</span>
<span class="c1">#             &#39;sys&#39;, &#39;src_type&#39;, &#39;trgt_type&#39;, &#39;src_file&#39;, &#39;trgt_file&#39;</span>
<span class="c1">#         ])</span>
    
    <span class="k">return</span> <span class="n">non_links_df</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">path</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="s1">&#39;../benchmarking/traceability/testbeds/nltk&#39;</span><span class="p">);</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;*&#39;</span><span class="p">))</span>
<span class="n">se_csvs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;*pre*.csv&#39;</span><span class="p">))</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">se_csvs</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">names</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;file&#39;</span><span class="p">,</span> <span class="s1">&#39;text&#39;</span><span class="p">],</span> <span class="n">header</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">delimiter</span> <span class="o">=</span> <span class="s1">&#39; &#39;</span><span class="p">)</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">for</span> <span class="n">fn</span> <span class="ow">in</span> <span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;*pre*.csv&#39;</span><span class="p">):</span>
    <span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">fn</span><span class="p">,</span> <span class="n">names</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;file&#39;</span><span class="p">,</span> <span class="s1">&#39;text&#39;</span><span class="p">],</span> <span class="n">header</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
    <span class="nb">print</span><span class="p">(</span><span class="n">df</span><span class="o">.</span><span class="n">head</span><span class="p">())</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_ground_truth</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">language</span><span class="p">):</span>
    <span class="n">all_links</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">([],</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
        <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;from_type&#39;</span><span class="p">,</span> <span class="s1">&#39;to_type&#39;</span><span class="p">,</span> <span class="s1">&#39;from_file&#39;</span><span class="p">,</span> <span class="s1">&#39;to_file&#39;</span><span class="p">,</span> <span class="s1">&#39;from_doc&#39;</span><span class="p">,</span> <span class="s1">&#39;to_doc&#39;</span>
    <span class="p">])</span>
    <span class="k">for</span> <span class="n">fn</span> <span class="ow">in</span> <span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;*.txt&#39;</span><span class="p">):</span>
        <span class="n">content</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">fn</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
        <span class="n">content</span> <span class="o">=</span> <span class="n">content</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
        
        <span class="n">sys</span><span class="p">,</span> <span class="n">from_type</span><span class="p">,</span> <span class="n">to_type</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">content</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="n">content</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span>
        
        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fn</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
            <span class="n">links</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
            
        <span class="k">for</span> <span class="n">link</span> <span class="ow">in</span> <span class="n">links</span><span class="p">:</span>
            <span class="n">link</span> <span class="o">=</span> <span class="n">link</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
            <span class="n">root</span><span class="p">,</span> <span class="n">children</span> <span class="o">=</span> <span class="n">link</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">link</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
            <span class="n">root</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">root</span><span class="p">)</span><span class="o">.</span><span class="n">with_suffix</span><span class="p">(</span><span class="s1">&#39;.bpe&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">name</span>
            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">parent</span><span class="o">/</span><span class="s1">&#39;bpe&#39;</span><span class="o">/</span><span class="n">language</span><span class="o">/</span><span class="n">sys</span><span class="o">/</span><span class="n">from_type</span><span class="o">/</span><span class="n">root</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                <span class="n">root_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
            <span class="n">children</span> <span class="o">=</span> <span class="p">[</span><span class="n">Path</span><span class="p">(</span><span class="n">child</span><span class="p">)</span><span class="o">.</span><span class="n">with_suffix</span><span class="p">(</span><span class="s1">&#39;.bpe&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">name</span> <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">]</span>
            <span class="n">children</span> <span class="o">=</span> <span class="p">[</span><span class="n">Path</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">child</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">2</span><span class="p">:]))</span> <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">]</span>
            <span class="k">for</span> <span class="n">child</span> <span class="ow">in</span> <span class="n">children</span><span class="p">:</span>
                <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">parent</span><span class="o">/</span><span class="s1">&#39;bpe&#39;</span><span class="o">/</span><span class="n">language</span><span class="o">/</span><span class="n">sys</span><span class="o">/</span><span class="n">to_type</span><span class="o">/</span><span class="n">child</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                    <span class="n">child_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
                <span class="n">all_links</span> <span class="o">=</span> <span class="n">all_links</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s1">&#39;sys&#39;</span><span class="p">:</span> <span class="n">sys</span><span class="p">,</span>
                                              <span class="s1">&#39;from_type&#39;</span><span class="p">:</span> <span class="n">from_type</span><span class="p">,</span>
                                              <span class="s1">&#39;to_type&#39;</span><span class="p">:</span> <span class="n">to_type</span><span class="p">,</span>
                                              <span class="s1">&#39;from_file&#39;</span><span class="p">:</span> <span class="n">root</span><span class="p">,</span>
                                              <span class="s1">&#39;to_file&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">child</span><span class="p">),</span>
                                              <span class="s1">&#39;from_doc&#39;</span><span class="p">:</span> <span class="n">root_content</span><span class="p">,</span>
                                              <span class="s1">&#39;to_doc&#39;</span><span class="p">:</span> <span class="n">child_content</span><span class="p">},</span>
                                             <span class="n">ignore_index</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
            
    <span class="k">return</span> <span class="n">all_links</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">get_non_ground_truth</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">language</span><span class="p">,</span> <span class="n">gt</span><span class="p">):</span>
    <span class="n">all_non_links</span> <span class="o">=</span> <span class="p">[]</span>
    
    <span class="n">existing_links</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">link</span><span class="p">)</span> <span class="k">for</span> <span class="n">link</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">gt</span><span class="p">[</span><span class="s1">&#39;from_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">(),</span> <span class="n">gt</span><span class="p">[</span><span class="s1">&#39;to_file&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">to_list</span><span class="p">())]</span>
    <span class="n">bpe_files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">path</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="s1">&#39;**/*.bpe&#39;</span><span class="p">))</span>
    <span class="n">random</span><span class="o">.</span><span class="n">shuffle</span><span class="p">(</span><span class="n">bpe_files</span><span class="p">)</span>
    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">bpe_files</span><span class="p">[:</span><span class="mi">500</span><span class="p">]:</span>
        <span class="n">sys</span> <span class="o">=</span> <span class="n">i</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span>
        <span class="n">from_type</span> <span class="o">=</span> <span class="n">i</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span>
        <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">from_type</span><span class="p">)</span> <span class="o">!=</span> <span class="s1">&#39;req&#39;</span><span class="p">:</span> <span class="k">continue</span>
        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
            <span class="n">i_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
        <span class="n">random</span><span class="o">.</span><span class="n">shuffle</span><span class="p">(</span><span class="n">bpe_files</span><span class="p">)</span>
        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="n">bpe_files</span><span class="p">[:</span><span class="mi">500</span><span class="p">]:</span>
            <span class="k">if</span> <span class="n">i</span> <span class="o">==</span> <span class="n">j</span><span class="p">:</span> <span class="k">continue</span>
            <span class="k">if</span> <span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">i</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">j</span><span class="o">.</span><span class="n">name</span><span class="p">])</span> <span class="ow">in</span> <span class="n">existing_links</span><span class="p">:</span> <span class="k">continue</span>
            <span class="n">to_type</span> <span class="o">=</span> <span class="n">j</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">name</span>
            <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">to_type</span><span class="p">)</span> <span class="o">==</span> <span class="s1">&#39;req&#39;</span><span class="p">:</span> <span class="k">continue</span>
<span class="c1">#             if from_type == to_type: continue</span>
            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">j</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
                <span class="n">j_content</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
            <span class="n">all_non_links</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">sys</span><span class="p">,</span> <span class="n">from_type</span><span class="p">,</span> <span class="n">to_type</span><span class="p">,</span> <span class="n">i</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">j</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">i_content</span><span class="p">,</span> <span class="n">j_content</span><span class="p">])</span>
    
    <span class="n">all_non_links</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">all_non_links</span><span class="p">,</span> <span class="n">columns</span> <span class="o">=</span> <span class="p">[</span>
        <span class="s1">&#39;sys&#39;</span><span class="p">,</span> <span class="s1">&#39;from_type&#39;</span><span class="p">,</span> <span class="s1">&#39;to_type&#39;</span><span class="p">,</span> <span class="s1">&#39;from_file&#39;</span><span class="p">,</span> <span class="s1">&#39;to_file&#39;</span><span class="p">,</span> <span class="s1">&#39;from_doc&#39;</span><span class="p">,</span> <span class="s1">&#39;to_doc&#39;</span>
    <span class="p">])</span>
    <span class="k">return</span> <span class="n">all_non_links</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">gen_gt_ngt</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">lang</span><span class="p">):</span>
    <span class="n">gt</span> <span class="o">=</span> <span class="n">get_ground_truth</span><span class="p">(</span><span class="n">path</span><span class="o">/</span><span class="s1">&#39;groundtruth&#39;</span><span class="o">/</span><span class="n">lang</span><span class="p">,</span> <span class="n">lang</span><span class="p">)</span>
    <span class="n">ngt</span> <span class="o">=</span> <span class="n">get_non_ground_truth</span><span class="p">(</span><span class="n">path</span><span class="o">/</span><span class="s1">&#39;bpe&#39;</span><span class="o">/</span><span class="n">lang</span><span class="p">,</span> <span class="n">lang</span><span class="p">,</span> <span class="n">gt</span><span class="p">)</span>
    
    <span class="k">return</span> <span class="n">gt</span><span class="p">,</span> <span class="n">ngt</span>
</pre></div>

    </div>
</div>
</div>

</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">

<div class="inner_cell">
    <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">from</span> <span class="nn">nbdev.export</span> <span class="k">import</span> <span class="n">notebook2script</span>
<span class="n">notebook2script</span><span class="p">()</span>
</pre></div>

    </div>
</div>
</div>

<div class="output_wrapper">
<div class="output">

<div class="output_area">

<div class="output_subarea output_stream output_stdout output_text">
<pre>Converted 00_mgmnt.prep.i.ipynb.
Converted 01_exp.i.ipynb.
Converted 02_mgmnt.db.mongo.ipynb.
Converted 03_repr.i.ipynb.
Converted 04_mining.ir.model.ipynb.
Converted 05_mining.ir.i.ipynb.
Converted 06_benchmark.traceability.ipynb.
Converted 07_repr.roberta.train.ipynb.
Converted 08_exp.info.ipynb.
Converted 09_desc.stats.ipynb.
Converted 10_vis.ipynb.
Converted 11_mgmnt.prep.conv.ipynb.
Converted 12_repr.roberta.eval.ipynb.
Converted 14_mgmnt.prep.bpe.ipynb.
Converted 15_desc.metrics.se.ipynb.
Converted 16_repr.word2vec.train.ipynb.
Converted 17_repr.doc2vec.train.ipynb.
Converted 18_repr.doc2vec.eval.ipynb.
Converted 19_repr.word2vec.eval.ipynb.
Converted 20_benchmark.codegen.ipynb.
Converted 21_inf.i.ipynb.
Converted 22_inf.bayesian.ipynb.
Converted 23_inf.causal.ipynb.
Converted 24_mgmnt.corpus.ipynb.
Converted 25_mgmnt.prep.traceability.ipynb.
Converted 26_mgmnt.prep.nltk.ipynb.
Converted aa_blog.example.ipynb.
Converted ab_templates.example.ipynb.
Converted ac_emp.eval.pp1.rq1.ipynb.
Converted ad_emp.eval.pp1.rq2.ipynb.
Converted ae_emp.eval.pp1.rq3.ipynb.
Converted af_emp.eval.pp1.rq4.ipynb.
Converted index.ipynb.
</pre>
</div>
</div>

</div>
</div>

</div>
</div>