aging-research
/
species


  
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            drop_species:   ["Bos_grunniens", "Ornithorhynchus_anatinus", "Erinaceus_europaeus"]
drop_samples:
  - "SRR032135" #champanzee liver Eugen did not like
  - "SRR5928355" #newborn
  - "SRR5928357" #newborn
  - "SRR5928359" #newborn
  - "SRR306394" #newborn
  - "SRR306397" #newborn
  - "SRR306400" #newborn
  - "SRR8309416" #brainstem
  - "SRR8309417" #brainstem
  - "SRR9066909" #old
  - "SRR5767265" #too young
  - "SRR5767266" #too young
  - "SRR5767268" #too young
  - "SRR5767269" #too young
  - "SRR5767270" #too young
  - "SRR867587" #pooled
  - "SRR908037" #pooled
  - "SRR908038" #pooled
  - "SRR306838" #male mistaken for female Vlada's outlier
  - "SRR8991100" #happened to be single-cell - Vlada's outlier
  - "SRR306847" #Vlada's outlier that looks ok otherwise
  - "SRR8750397" #may be single-cell
  - "SRR8750398" #may be single-cell
  - "SRR8750399" #may be single-cell
  - "SRR3109726" #old kidney
  - "SRR3109728" #old kidney
  - "SRR3403827" #brainsteam
  - "SRR3403828" #brainsteam
  - "SRR306404" #hypoxia exposed
  - "SRR306406" #hypoxia exposed
  - "SRR1653996" #may be single-cell
  - "SRR1654032" #may be single-cell

tissues: ["Heart", "Kidney", "Liver", "Brain", "Lung"]
min_samples_per_species: 2
orthology: "one2oneplus_directed"
reference_species: "Homo_sapiens"
animal_class: "Mammalia"
na_threshold_expressions: 0.1 # the toughest expressions threshold
na_threshold_genes: 0.5 #less tough genes threshold