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Simon
/
ga-lrhighlat-swg
mirror of https://github.com/cwegg/ga-lrhighlat-swg

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dvc.yaml 5.4 KB
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  1. stages:
    2. 

  2.   make-field-files:
    3. 

  3.     foreach: ${submission}
    4. 

  4.     do:
    5. 

  5.       cmd: swgworkflow/make_field_files.py --output output/${key}/fields.fits ${key}
    6. 

  6.       params:
    7. 

  7.       - submission.${key}.footprint
    8. 

  8.       deps:
    9. 

  9.       - ${item.footprint.footprint_file}
    10. 

  10.       - swgworkflow/make_field_files.py
    11. 

  11.       outs:
    12. 

  12.       - output/${key}/fields.fits
    13. 

  13.   create-empty-xmls:
    14. 

  14.     foreach: ${submission}
    15. 

  15.     do:
    16. 

  16.       cmd: weaveworkflow/mos/workflow/mos_stage2/create_xml_files.py output/${key}/fields.fits
    17. 

  17.         --outdir output/${key}/01-empty
    18. 

  18.       deps:
    19. 

  19.       - output/${key}/fields.fits
    20. 

  20.       - weaveworkflow/mos/workflow/mos_stage2/create_xml_files.py
    21. 

  21.       outs:
    22. 

  22.       - output/${key}/01-empty
    23. 

  23.   add-targets:
    24. 

  24.     foreach: ${submission}
    25. 

  25.     do:
    26. 

  26.       cmd: weaveworkflow/mos/workflow/mos_stage3/add_targets_to_xmls.py  --catalogues
    27. 

  27.         ${item.catalogue_dir}/*.fits --outdir output/${key}/02-targets output/${key}/01-empty/*
    28. 

  28.       deps:
    29. 

  29.       - output/${key}/01-empty
    30. 

  30.       - ${item.catalogue_dir}
    31. 

  31.       - weaveworkflow/mos/workflow/mos_stage3/add_targets_to_xmls.py
    32. 

  32.       outs:
    33. 

  33.       - output/${key}/02-targets
    34. 

  34.   add-guide-and-calib-stars:
    35. 

  35.     foreach: ${submission}
    36. 

  36.     do:
    37. 

  37.       cmd: >-
    38. 

  38.         weaveworkflow/mos/workflow/mos_stage4/add_guide_and_calib_stars.py
    39. 

  39.         --outdir output/${key}/03-guide-and-calib-stars output/${key}/02-targets/*.xml
    40. 

  40.       deps:
    41. 

  41.       - output/${key}/02-targets
    42. 

  42.       - weaveworkflow/mos/workflow/mos_stage4/add_guide_and_calib_stars.py
    43. 

  43.       outs:
    44. 

  44.       - output/${key}/03-guide-and-calib-stars
    45. 

  45.   clean-xmls:
    46. 

  46.     foreach: ${submission}
    47. 

  47.     do:
    48. 

  48.       cmd: swgworkflow/clean_xml_targets.py --outdir output/${key}/04-cleaned  output/${key}/03-guide-and-calib-stars/*.xml
    49. 

  49.       deps:
    50. 

  50.       - output/${key}/03-guide-and-calib-stars
    51. 

  51.       - swgworkflow/clean_xml_targets.py
    52. 

  52.       outs:
    53. 

  53.       - output/${key}/04-cleaned
    54. 

  54.   configure:
    55. 

  55.     foreach: ${submission}
    56. 

  56.     do:
    57. 

  57.       cmd: >-
    58. 

  58.         swgworkflow/configurefields.py --epoch ${item.configure_epoch} --sync
    59. 

  59.         --extra_configure_options ${item.configure_options}
    60. 

  60.         --multistage ${item.multistage}
    61. 

  61.         --outdir output/${key}/05-configured
    62. 

  62.         --xml_file_list output/${key}/04-cleaned/*.xml
    63. 

  63.       params:
    64. 

  64.       - submission.${key}.multistage
    65. 

  65.       - submission.${key}.configure_epoch
    66. 

  66.       - submission.${key}.configure_options
    67. 

  67.       deps:
    68. 

  68.       - output/${key}/04-cleaned
    69. 

  69.       - swgworkflow/configurefields.py
    70. 

  70.       - /soft/configure/configure
    71. 

  71.       outs:
    72. 

  72.       - output/${key}/05-configured
    73. 

  73.   add-configured-to-catalogues:
    74. 

  74.     foreach: ${submission}
    75. 

  75.     do:
    76. 

  76.       cmd: >-
    77. 

  77.         swgworkflow/add_configured_to_catalogues.py
    78. 

  78.         --catalogues ${item.catalogue_dir}/*.fits
    79. 

  79.         --outdir output/${key}/catalogs-configured/
    80. 

  80.         output/${key}/05-configured/*.xml
    81. 

  81.       deps:
    82. 

  82.       - ${item.catalogue_dir}
    83. 

  83.       - swgworkflow/add_configured_to_catalogues.py
    84. 

  84.       - output/${key}/05-configured
    85. 

  85.       outs:
    86. 

  86.       - output/${key}/catalogs-configured
    87. 

  87.   add-configured-to-external-source-lists:
    88. 

  88.     foreach: ${submission}
    89. 

  89.     do:
    90. 

  90.       cmd: >-
    91. 

  91.         swgworkflow/add_configured_to_source_lists.py
    92. 

  92.         --catalogues output/${key}/catalogs-configured/*.fits
    93. 

  93.         --suffix=-configured-${key}
    94. 

  94.         --outdir output/${key}/external-configured/ ${item.external_cats}/*.fits
    95. 

  95.       deps:
    96. 

  96.       - output/${key}/catalogs-configured
    97. 

  97.       - ${item.external_cats}
    98. 

  98.       - swgworkflow/add_configured_to_source_lists.py
    99. 

  99.       outs:
    100. 

  100.       - output/${key}/external-configured
    101. 

  101.   add-configured-to-internal-source-lists:
    102. 

  102.     foreach: ${submission}
    103. 

  103.     do:
    104. 

  104.       cmd: >-
    105. 

  105.         swgworkflow/add_configured_to_source_lists.py
    106. 

  106.         --catalogues output/${key}/catalogs-configured/*.fits
    107. 

  107.         --suffix=-configured-${key}
    108. 

  108.         --outdir output/${key}/internal-configured/ ${item.internal_cats}/*.fits
    109. 

  109.       deps:
    110. 

  110.       - output/${key}/catalogs-configured
    111. 

  111.       - ${item.internal_cats}
    112. 

  112.       - swgworkflow/add_configured_to_catalogues.py
    113. 

  113.       outs:
    114. 

  114.       - output/${key}/internal-configured
    115. 

  115. 

  116.   downsample_SV_exp2_DR3_dwarfonly:
    117. 

  117.     cmd: >-
    118. 

  118.       mkdir -p catalogues/SV_exp2_DR3_dwarfonly_downsample &&
    119. 

  119.       swgworkflow/downsample_SVexp2.py
    120. 

  120.       --input_catalogue catalogues/SV_exp2_DR3_dwarfonly/cat_exp2_SV.fits
    121. 

  121.       --output_catalogue catalogues/SV_exp2_DR3_dwarfonly_downsample/cat_exp2_SV.fits
    122. 

  122.       --downsample_low_prio 0.5 --overwrite
    123. 

  123.     deps:
    124. 

  124.     - catalogues/SV_exp2_DR3_dwarfonly/cat_exp2_SV.fits
    125. 

  125.     - swgworkflow/downsample_SVexp2.py
    126. 

  126.     outs:
    127. 

  127.     - catalogues/SV_exp2_DR3_dwarfonly_downsample/cat_exp2_SV.fits
    128. 

  128. 

  129.   downsample_SV_exp2_DR3_onlyprio8:
    130. 

  130.     cmd: >-
    131. 

  131.       mkdir -p catalogues/SV_exp2_DR3_dwarfonly_onlyprio8 &&
    132. 

  132.       swgworkflow/downsample_SVexp2.py
    133. 

  133.       --input_catalogue catalogues/SV_exp2_DR3_dwarfonly/cat_exp2_SV.fits
    134. 

  134.       --output_catalogue catalogues/SV_exp2_DR3_dwarfonly_onlyprio8/cat_exp2_SV.fits
    135. 

  135.       --downsample_low_prio 0.5 --only_prio 8 --overwrite
    136. 

  136.     deps:
    137. 

  137.     - catalogues/SV_exp2_DR3_dwarfonly/cat_exp2_SV.fits
    138. 

  138.     - swgworkflow/downsample_SVexp2.py
    139. 

  139.     outs:
    140. 

  140.     - catalogues/SV_exp2_DR3_dwarfonly_onlyprio8/cat_exp2_SV.fits
    141. 

  141. 

  142.   downsample_SV_exp2_0p5:
    143. 

  143.     cmd: >-
    144. 

  144.       mkdir -p catalogues/SV_exp2_downsample0.5 &&
    145. 

  145.       swgworkflow/downsample_SVexp2.py
    146. 

  146.       --input_catalogue catalogues/SV_exp2/cat_exp2_SV.fits
    147. 

  147.       --output_catalogue catalogues/SV_exp2_downsample0.5/cat_exp2_SV.fits
    148. 

  148.       --downsample_low_prio 0.5 --overwrite
    149. 

  149.     deps:
    150. 

  150.     - catalogues/SV_exp2/cat_exp2_SV.fits
    151. 

  151.     - swgworkflow/downsample_SVexp2.py
    152. 

  152.     outs:
    153. 

  153.     - catalogues/SV_exp2_downsample0.5/cat_exp2_SV.fits
    154.
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