ml4g_project_1/environment.yml

name: ml4g_project_1
channels:
  - pytorch
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_llvm
  - anyio=3.5.0=py38h06a4308_0
  - argon2-cffi=21.3.0=pyhd3eb1b0_0
  - argon2-cffi-bindings=21.2.0=py38h7f8727e_0
  - asttokens=2.0.5=pyhd3eb1b0_0
  - attrs=21.4.0=pyhd3eb1b0_0
  - babel=2.9.1=pyhd3eb1b0_0
  - backcall=0.2.0=pyhd3eb1b0_0
  - bedtools=2.30.0=h468198e_3
  - blas=1.0=mkl
  - bleach=4.1.0=pyhd3eb1b0_0
  - bottleneck=1.3.4=py38hce1f21e_0
  - brotlipy=0.7.0=py38h27cfd23_1003
  - bzip2=1.0.8=h7b6447c_0
  - c-ares=1.18.1=h7f8727e_0
  - ca-certificates=2022.3.18=h06a4308_0
  - certifi=2021.10.8=py38h06a4308_2
  - cffi=1.15.0=py38hd667e15_1
  - charset-normalizer=2.0.4=pyhd3eb1b0_0
  - cryptography=36.0.0=py38h9ce1e76_0
  - cudatoolkit=10.2.89=hfd86e86_1
  - debugpy=1.5.1=py38h295c915_0
  - decorator=5.1.1=pyhd3eb1b0_0
  - defusedxml=0.7.1=pyhd3eb1b0_0
  - entrypoints=0.3=py38_0
  - executing=0.8.3=pyhd3eb1b0_0
  - ffmpeg=4.2.2=h20bf706_0
  - freetype=2.11.0=h70c0345_0
  - giflib=5.2.1=h7b6447c_0
  - gmp=6.2.1=h2531618_2
  - gnutls=3.6.15=he1e5248_0
  - idna=3.3=pyhd3eb1b0_0
  - importlib-metadata=4.8.2=py38h06a4308_0
  - importlib_metadata=4.8.2=hd3eb1b0_0
  - intel-openmp=2021.4.0=h06a4308_3561
  - ipykernel=6.9.1=py38h06a4308_0
  - ipython=8.1.1=py38h06a4308_0
  - ipython_genutils=0.2.0=pyhd3eb1b0_1
  - jedi=0.18.1=py38h06a4308_1
  - jinja2=3.0.3=pyhd3eb1b0_0
  - jpeg=9d=h7f8727e_0
  - json5=0.9.6=pyhd3eb1b0_0
  - jsonschema=3.2.0=pyhd3eb1b0_2
  - jupyter_client=7.1.2=pyhd3eb1b0_0
  - jupyter_core=4.9.2=py38h06a4308_0
  - jupyter_server=1.13.5=pyhd3eb1b0_0
  - jupyterlab=3.3.2=pyhd3eb1b0_0
  - jupyterlab_pygments=0.1.2=py_0
  - jupyterlab_server=2.10.3=pyhd3eb1b0_1
  - krb5=1.19.2=hac12032_0
  - lame=3.100=h7b6447c_0
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.35.1=h7274673_9
  - libcurl=7.82.0=h7bff187_0
  - libdeflate=1.10=h7f98852_0
  - libedit=3.1.20210910=h7f8727e_0
  - libev=4.33=h7f8727e_1
  - libffi=3.3=he6710b0_2
  - libgcc-ng=11.2.0=h1d223b6_14
  - libgfortran-ng=7.5.0=ha8ba4b0_17
  - libgfortran4=7.5.0=ha8ba4b0_17
  - libidn2=2.3.2=h7f8727e_0
  - libllvm11=11.1.0=h3826bc1_1
  - libnghttp2=1.47.0=h727a467_0
  - libopus=1.3.1=h7b6447c_0
  - libpng=1.6.37=hbc83047_0
  - libsodium=1.0.18=h7b6447c_0
  - libssh2=1.10.0=ha56f1ee_2
  - libstdcxx-ng=11.2.0=he4da1e4_14
  - libtasn1=4.16.0=h27cfd23_0
  - libtiff=4.2.0=h85742a9_0
  - libunistring=0.9.10=h27cfd23_0
  - libuv=1.40.0=h7b6447c_0
  - libvpx=1.7.0=h439df22_0
  - libwebp=1.2.2=h55f646e_0
  - libwebp-base=1.2.2=h7f8727e_0
  - libzlib=1.2.11=h36c2ea0_1013
  - llvm-openmp=13.0.1=he0ac6c6_1
  - llvmlite=0.38.0=py38h4ff587b_0
  - lz4-c=1.9.3=h295c915_1
  - markupsafe=2.0.1=py38h27cfd23_0
  - matplotlib-inline=0.1.2=pyhd3eb1b0_2
  - mistune=0.8.4=py38h7b6447c_1000
  - mkl=2021.4.0=h06a4308_640
  - mkl-service=2.4.0=py38h7f8727e_0
  - mkl_fft=1.3.1=py38hd3c417c_0
  - mkl_random=1.2.2=py38h51133e4_0
  - nbclassic=0.3.5=pyhd3eb1b0_0
  - nbclient=0.5.11=pyhd3eb1b0_0
  - nbconvert=6.3.0=py38h06a4308_0
  - nbformat=5.1.3=pyhd3eb1b0_0
  - ncurses=6.3=h7f8727e_2
  - nest-asyncio=1.5.1=pyhd3eb1b0_0
  - nettle=3.7.3=hbbd107a_1
  - notebook=6.4.8=py38h06a4308_0
  - numba=0.55.1=py38h51133e4_0
  - numexpr=2.8.1=py38h6abb31d_0
  - numpy=1.21.2=py38h20f2e39_0
  - numpy-base=1.21.2=py38h79a1101_0
  - openh264=2.1.1=h4ff587b_0
  - openssl=1.1.1n=h7f8727e_0
  - packaging=21.3=pyhd3eb1b0_0
  - pandas=1.4.1=py38h295c915_0
  - pandocfilters=1.5.0=pyhd3eb1b0_0
  - parso=0.8.3=pyhd3eb1b0_0
  - pexpect=4.8.0=pyhd3eb1b0_3
  - pickleshare=0.7.5=pyhd3eb1b0_1003
  - pillow=9.0.1=py38h22f2fdc_0
  - pip=21.2.4=py38h06a4308_0
  - prometheus_client=0.13.1=pyhd3eb1b0_0
  - prompt-toolkit=3.0.20=pyhd3eb1b0_0
  - ptyprocess=0.7.0=pyhd3eb1b0_2
  - pure_eval=0.2.2=pyhd3eb1b0_0
  - pybedtools=0.9.0=py38hf4f3596_1
  - pybigwig=0.3.18=py38hf8a4f86_2
  - pycparser=2.21=pyhd3eb1b0_0
  - pygments=2.11.2=pyhd3eb1b0_0
  - pyopenssl=22.0.0=pyhd3eb1b0_0
  - pyparsing=3.0.4=pyhd3eb1b0_0
  - pyrsistent=0.18.0=py38heee7806_0
  - pysam=0.18.0=py38h8bf8b8d_2
  - pysocks=1.7.1=py38h06a4308_0
  - python=3.8.12=h12debd9_0
  - python-dateutil=2.8.2=pyhd3eb1b0_0
  - python_abi=3.8=2_cp38
  - pytorch=1.11.0=py3.8_cuda10.2_cudnn7.6.5_0
  - pytorch-mutex=1.0=cuda
  - pytz=2021.3=pyhd3eb1b0_0
  - pyzmq=22.3.0=py38h295c915_2
  - readline=8.1.2=h7f8727e_1
  - requests=2.27.1=pyhd3eb1b0_0
  - scipy=1.7.3=py38hc147768_0
  - send2trash=1.8.0=pyhd3eb1b0_1
  - setuptools=58.0.4=py38h06a4308_0
  - six=1.16.0=pyhd3eb1b0_1
  - sniffio=1.2.0=py38h06a4308_1
  - sqlite=3.38.0=hc218d9a_0
  - stack_data=0.2.0=pyhd3eb1b0_0
  - tbb=2021.5.0=hd09550d_0
  - terminado=0.13.1=py38h06a4308_0
  - testpath=0.5.0=pyhd3eb1b0_0
  - tk=8.6.11=h1ccaba5_0
  - torchaudio=0.11.0=py38_cu102
  - torchvision=0.12.0=py38_cu102
  - tornado=6.1=py38h27cfd23_0
  - traitlets=5.1.1=pyhd3eb1b0_0
  - typing-extensions=4.1.1=hd3eb1b0_0
  - typing_extensions=4.1.1=pyh06a4308_0
  - urllib3=1.26.8=pyhd3eb1b0_0
  - wcwidth=0.2.5=pyhd3eb1b0_0
  - webencodings=0.5.1=py38_1
  - websocket-client=0.58.0=py38h06a4308_4
  - wheel=0.37.1=pyhd3eb1b0_0
  - x264=1!157.20191217=h7b6447c_0
  - xz=5.2.5=h7b6447c_0
  - zeromq=4.3.4=h2531618_0
  - zipp=3.7.0=pyhd3eb1b0_0
  - zlib=1.2.11=h36c2ea0_1013
  - zstd=1.4.9=haebb681_0
  - pip:
    - aiohttp==3.8.1
    - aiohttp-retry==2.4.6
    - aiosignal==1.2.0
    - appdirs==1.4.4
    - async-timeout==4.0.2
    - asyncssh==2.8.1
    - atpublic==3.0.1
    - colorama==0.4.4
    - commonmark==0.9.1
    - configobj==5.0.6
    - dictdiffer==0.9.0
    - diskcache==5.4.0
    - distro==1.7.0
    - dpath==2.0.6
    - dulwich==0.20.35
    - dvc==2.9.5
    - flatten-dict==0.4.2
    - flufl-lock==7.0
    - frozenlist==1.3.0
    - fsspec==2022.2.0
    - ftfy==6.1.1
    - funcy==1.17
    - future==0.18.2
    - gitdb==4.0.9
    - gitpython==3.1.27
    - grandalf==0.6
    - importlib-resources==5.4.0
    - joblib==1.1.0
    - mailchecker==4.1.14
    - multidict==6.0.2
    - nanotime==0.5.2
    - pathspec==0.9.0
    - phonenumbers==8.12.45
    - ply==3.11
    - psutil==5.9.0
    - pyasn1==0.4.8
    - pydot==1.4.2
    - pyfaidx==0.6.4
    - pyfasta==0.5.2
    - pygit2==1.9.0
    - pygtrie==2.4.2
    - python-benedict==0.25.0
    - python-fsutil==0.6.0
    - python-slugify==6.1.1
    - pyyaml==6.0
    - rich==12.0.0
    - ruamel-yaml==0.17.21
    - ruamel-yaml-clib==0.2.6
    - scikit-learn==1.0.2
    - scmrepo==0.0.7
    - shortuuid==1.0.8
    - shtab==1.5.3
    - smmap==5.0.0
    - tabulate==0.8.9
    - text-unidecode==1.3
    - threadpoolctl==3.1.0
    - toml==0.10.2
    - tqdm==4.63.0
    - voluptuous==0.12.2
    - xmltodict==0.12.0
    - yarl==1.7.2
    - zc-lockfile==2.0
prefix: /home/juanbermeo/anaconda3/envs/ml4g_project_1