BioBERT-DAGsHub/relation-extraction/metrics.py

# coding=utf-8
# Modified from transformers (Hugging face)
#
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION.  All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

try:
    from scipy.stats import pearsonr, spearmanr
    from sklearn.metrics import matthews_corrcoef, f1_score

    _has_sklearn = True
except (AttributeError, ImportError):
    _has_sklearn = False


def is_sklearn_available():
    return _has_sklearn

if _has_sklearn:
    """
    def simple_accuracy(preds, labels):
        return (preds == labels).mean()
    """

    def acc_and_f1(preds, labels):
        acc = simple_accuracy(preds, labels)
        f1 = f1_score(y_true=labels, y_pred=preds)
        return {
            "acc": acc,
            "f1": f1,
            "acc_and_f1": (acc + f1) / 2,
        }

    """
    def pearson_and_spearman(preds, labels):
        pearson_corr = pearsonr(preds, labels)[0]
        spearman_corr = spearmanr(preds, labels)[0]
        return {
            "pearson": pearson_corr,
            "spearmanr": spearman_corr,
            "corr": (pearson_corr + spearman_corr) / 2,
        }
    """

    def glue_compute_metrics(task_name, preds, labels):
        assert len(preds) == len(labels)
        if task_name == "sst-2":
            return acc_and_f1(preds, labels)
        else:
            raise KeyError(task_name)