stdpopsim species resources

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/stdpopsim_kern-dataset")

fs.listdir("s3://stdpopsim")

Description:

Contains all resources (genome specifications, recombination maps, etc.) required for species specific simulation with the stdpopsim package. These resources are originally from a variety of other consortium and published work but are consolidated here for ease of access and use. If you are interested in adding a new species to the stdpopsim resource please raise an issue on the stdpopsim GitHub page to have the necessary files added here.

Contact:

Contains all resources (genome specifications, recombination maps, etc.) required for species specific simulation with the stdpopsim package. These resources are originally from a variety of other consortium and published work but are consolidated here for ease of access and use. If you are interested in adding a new species to the stdpopsim resource please raise an issue on the stdpopsim GitHub page to have the necessary files added here.

Update Frequency:

Data will be added as new species, genome assemblies, and genetic map data for already included species become available.

Managed By:

Andrew Kern & Jerome Kelleher

Resources:

1. resource:
   • Description: https://stdpopsim.readthedocs.io/en/latest/
   • ARN: arn:aws:s3:::stdpopsim
   • Region: us-west-2
   • Type: S3 Bucket

Tags:

aws-pds, genetic maps, life sciences, population genetics, recombination maps, simulations