DagsHub-Datasets
/
sgnex-dataset


  
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            The Singapore Nanopore Expression (SG-NEx) Project: Release updates on AWS S3 open data 

Version Number: V0.4.0              
Date: 2023-03-06
By: Ying Chen, Genome Insitute of Singapore
Update of the SG-NEx data on AWS. Includes raw signal data in blow5 format. Please refer to https://github.com/GoekeLab/sg-nex-data for a detailed documentation.

Data access tutorial: https://github.com/GoekeLab/sg-nex-data/blob/master/docs/AWS_data_access_tutorial.md
Data browser link: http://sg-nex-data-blow5.s3-website-ap-southeast-1.amazonaws.com/
Contact and questions: https://github.com/GoekeLab/sg-nex-data/discussions


Version Number: V0.3.0               
Date: 2022-07-28
By: Ying Chen, Genome Insitute of Singapore
Initial release of the SG-NEx data on AWS. Includes Nanopore direct RNA, cDNA, direct cDNA-Seq, short read RNA-Seq and m6ACE-Seq. Please refer to https://github.com/GoekeLab/sg-nex-data for a detailed documentation.

Data access tutorial: https://github.com/GoekeLab/sg-nex-data/blob/master/docs/AWS_data_access_tutorial.md
Data browser link: http://sg-nex-data.s3-website-ap-southeast-1.amazonaws.com/
Contact and questions: https://github.com/GoekeLab/sg-nex-data/discussions

Please refer to the pre-print describing the SG-NEx data resource:
Chen, Ying, et al. "A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines." bioRxiv (2021). doi: https://doi.org/10.1101/2021.04.21.440736