ont-open-data-dataset/s3://ont-open-data/gm24385_q20_2021.10/extra_analysis/structural_variants/fetch-truthset.sh

#!/bin/bash

# ./fetch-truthset.sh

mkdir ref
cd ref
wget http://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/human_g1k_v37.fasta.gz
gzip -d human_g1k_v37.fasta.gz
cd ..

mkdir truth
cd truth
for ext in .vcf.gz .vcf.gz.tbi .bed; do
    wget https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/analysis/NIST_SVs_Integration_v0.6/HG002_SVs_Tier1_v0.6${ext}
done

cd ..