Oregon Health & Science University Chronic Neutrophilic Leukemia Dataset

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/ohsu-cnl-dataset")

fs.listdir("s3://gdc-ohsu-cnl-phs001799-2-open")

Description:

The OHSU-CNL study offers the whole exome and RNA-sequencing on a cohort of 100 cases with rare hematologic malignancies such as Chronic neutrophilic leukemia (CNL), atypical chronic myeloid leukemia (aCML), and unclassified myelodysplastic syndrome/myeloproliferative neoplasms (MDS/MPN-U). This dataset contains open RNA-Seq Gene Expression Quantification data.

Contact:

The OHSU-CNL study offers the whole exome and RNA-sequencing on a cohort of 100 cases with rare hematologic malignancies such as Chronic neutrophilic leukemia (CNL), atypical chronic myeloid leukemia (aCML), and unclassified myelodysplastic syndrome/myeloproliferative neoplasms (MDS/MPN-U). This dataset contains open RNA-Seq Gene Expression Quantification data.

Update Frequency:

Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases, although this dataset may not be updated at every release.

Managed By:

https://ctds.uchicago.edu/

Resources:

1. resource:
   • Description: RNA-Seq Gene Expression Quantification
   • ARN: arn:aws:s3:::gdc-ohsu-cnl-phs001799-2-open
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, cancer, genomic, life sciences

Tools & Applications:

1. tools & applications:
   • Title: Genomic Data Commons
   • URL: https://portal.gdc.cancer.gov/projects/
   • AuthorName: National Cancer Institute
   • AuthorURL: https://gdc.cancer.gov/

Publication:

1. publication:
   • Title: Genomic landscape of neutrophilic leukemias of ambiguous diagnosis
   • URL: https://www.ncbi.nlm.nih.gov/pubmed/31366621
   • AuthorName: Zhang H, Wilmot B, Bottomly D et al.