Basic Local Alignment Sequences Tool (BLAST) Databases

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/ncbi-blast-databases-dataset")

fs.listdir("s3://ncbi-blast-databases")

Description:

A centralized repository of pre-formatted BLAST databases created by the National Center for Biotechnology Information (NCBI).

Contact:

A centralized repository of pre-formatted BLAST databases created by the National Center for Biotechnology Information (NCBI).

Update Frequency:

Periodically

Managed By:

NLM

Resources:

1. resource:
   • Description: BLAST databases with associated files in a public S3 bucket
   • ARN: arn:aws:s3:::ncbi-blast-databases
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, bioinformatics, biology, health, life sciences, genetic, genomic, transcriptomics, protein, reference index

Tools & Applications:

1. tools & applications:

   • Title: BLAST+ Docker
   • URL: https://github.com/ncbi/blast_plus_docs
   • AuthorName: NCBI BLAST

2. tools & applications:

   • Title: BLAST on the Cloud with NCBI’s ElasticBLAST
   • URL: https://medium.com/codex/blast-on-the-cloud-with-ncbis-elasticblast-3b35b29afde7
   • AuthorName: Sixing Huang
   • AuthorURL: https://dgg32.medium.com/

Publication:

1. publication:

   • Title: Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs
   • URL: https://pubmed.ncbi.nlm.nih.gov/9254694/
   • AuthorName: S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman

2. publication:

   • Title: BLAST+: Architecture and Applications
   • URL: https://pubmed.ncbi.nlm.nih.gov/20003500
   • AuthorName: Christiam Camacho 1 , George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden