Mouse Brain Anatomy: MouseLight Imagery

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/janelia-mouselight-dataset")

fs.listdir("s3://janelia-mouselight-imagery")

Description:

This data set, made available by Janelia's MouseLight project, consists of images and neuron annotations of the Mus musculus brain, stored in formats suitable for viewing and annotation using the HortaCloud cloud-based annotation system.

Contact:

This data set, made available by Janelia's MouseLight project, consists of images and neuron annotations of the Mus musculus brain, stored in formats suitable for viewing and annotation using the HortaCloud cloud-based annotation system.

Update Frequency:

As required

Managed By:

https://www.janelia.org

Resources:

1. resource:
   • Description: Imagery and Metadata
   • ARN: arn:aws:s3:::janelia-mouselight-imagery
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, biology, life sciences, imaging, neuroscience, neurobiology, neuroimaging, fluorescence imaging, microscopy, image processing

Tools & Applications:

1. tools & applications:

   • Title: MouseLight Project Website
   • URL: https://www.janelia.org/project-team/mouselight
   • AuthorName: Tiago A. Ferreira, Jayaram Chandrashekar

2. tools & applications:

   • Title: HortaCloud
   • URL: https://hortacloud.janelia.org/
   • AuthorName: David Schauder, Donald J. Olbris, Jody Clements, Cristian Goina, Robert R. Svirskas, Konrad Rokicki

3. tools & applications:

   • Title: MouseLight NeuronBrowser
   • URL: http://ml-neuronbrowser.janelia.org/
   • AuthorName: Tiago A. Ferreira, Jayaram Chandrashekar

Publication:

1. publication:
   • Title: Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain
   • URL: https://doi.org/10.1016/j.cell.2019.07.042
   • AuthorName: Johan Winnubst, Erhan Bas, Tiago A. Ferreira, Zhuhao Wu, Michael N. Economo, Patrick Edson, Ben J. Arthur, Christopher Bruns, Konrad Rokicki, David Schauder, Donald J. Olbris, Sean D. Murphy, David G. Ackerman, Cameron Arshadi, Perry Baldwin, Regina Blake, Ahmad Elsayed, Mashtura Hasan, Daniel Ramirez, Bruno Dos Santos, Monet Weldon, Amina Zafar, Joshua T. Dudman, Charles R. Gerfen, Adam W. Hantman, Wyatt Korff, Scott M. Sternson, Nelson Spruston, Karel Svoboda, Jayaram Chandrashekar