IBL Neuropixels Reproducible Ephys Data on AWS

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/ibl-reproducible-ephys-dataset")

fs.listdir("s3://ibl-brain-wide-map-public")

Description:

Electrophysiological recordings acquired using Neuropixels probes in different mice and labs, targeting the same brain locations (including posterior parietal cortex, hippocampus, and thalamus).

Contact:

Electrophysiological recordings acquired using Neuropixels probes in different mice and labs, targeting the same brain locations (including posterior parietal cortex, hippocampus, and thalamus).

Managed By:

https://www.internationalbrainlab.com

Resources:

1. resource:
   • Description: Project data in public bucket
   • ARN: arn:aws:s3:::ibl-brain-wide-map-public
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, life sciences, neuroscience, neurophysiology, open source software, Mus musculus

Tutorials:

1. tutorial:

   • Title: Download the public datasets
   • URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html
   • AuthorName: IBL Data Architecture Working Group
   • AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members

2. tutorial:

   • Title: Find data associated with a release or publication
   • URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
   • AuthorName: IBL Data Architecture Working Group
   • AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members

3. tutorial:

   • Title: Loading Data
   • URL: https://int-brain-lab.github.io/iblenv/loading_examples.html#
   • AuthorName: IBL Data Architecture Working Group
   • AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members

Tools & Applications:

1. tools & applications:

   • Title: ONE-api on pypi.python.org - python API to query and download neurophysiology data
   • URL: https://pypi.org/project/ONE-api/
   • AuthorName: IBL Data Architecture Working Group
   • AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members

2. tools & applications:

   • Title: Data Explorer
   • URL: https://viz.internationalbrainlab.org/app
   • AuthorName: IBL Data Architecture Working Group
   • AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members

Publication:

1. publication:
   • Title: Reproducibility of in-vivo electrophysiological measurements in mice
   • URL: https://doi.org/10.1101/2022.05.09.491042
   • AuthorName: International Brain Laboratory et al.
   • AuthorURL: www.internationalbrainlab.com