International Neuroimaging Data-Sharing Initiative (INDI)

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/fcp-indi-dataset")

fs.listdir("s3://fcp-indi")

Description:

This bucket contains multiple neuroimaging datasets that are part of the International Neuroimaging Data-Sharing Initiative. Raw human and non-human primate neuroimaging data include 1) Structural MRI; 2) Functional MRI; 3) Diffusion Tensor Imaging; 4) Electroencephalogram (EEG) In addition to the raw data, preprocessed data is also included for some datasets. A complete list of the available datasets can be seen in the documentation lonk provided below.

Contact:

This bucket contains multiple neuroimaging datasets that are part of the International Neuroimaging Data-Sharing Initiative. Raw human and non-human primate neuroimaging data include 1) Structural MRI; 2) Functional MRI; 3) Diffusion Tensor Imaging; 4) Electroencephalogram (EEG) In addition to the raw data, preprocessed data is also included for some datasets. A complete list of the available datasets can be seen in the documentation lonk provided below.

Update Frequency:

Each dataset within INDI has its own release schedule. See release date and frequency for each dataset

Managed By:

https://childmind.org/our-research/

Resources:

1. resource:
   • Description: Neuroimaging data for the International Neuroimaging Data-Sharing Initiative (INDI)
   • ARN: arn:aws:s3:::fcp-indi
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, life sciences, imaging, neuroimaging, neuroscience, magnetic resonance imaging, Homo sapiens

Tutorials:

1. tutorial:
   • Title: Downloading FCP-INDI Neuroimaging Data from Amazon S3
   • URL: https://fcon_1000.projects.nitrc.org/indi/s3/index.html
   • AuthorName: INDI

Tools & Applications:

1. tools & applications:
   • Title: Configurable Pipeline for the Analysis of Connectomes (C-PAC)
   • URL: https://fcp-indi.github.io/docs/user/index.html#
   • AuthorName: INDI C-PAC Team

Publication:

1. publication:

   • Title: Making data sharing work: The FCP/INDI experience
   • URL: https://www.sciencedirect.com/science/article/abs/pii/S1053811912010671?via%3Dihub
   • AuthorName: M. Mennes, B.B. Biswal, F.X. Castellanos, M.P. Milham

2. publication:

   • Title: Assessment of the impact of shared brain imaging data on the scientific literature
   • URL: https://www.nature.com/articles/s41467-018-04976-1
   • AuthorName: M.P. Milham, R.C. Craddock, ..., A. Klein

3. publication:

   • Title: An Open Resource for Non-human Primate Imaging
   • URL: https://www.sciencedirect.com/science/article/pii/S0896627318307682
   • AuthorName: M.P. Milham, L. Ai, ..., C.E. Schroeder

4. publication:

   • Title: Accelerating the Evolution of Nonhuman Primate Neuroimaging
   • URL: https://www.sciencedirect.com/science/article/pii/S089662731931089X
   • AuthorName: M.P. Milham, C. Petkov

5. publication:

   • Title: The NKI-Rockland sample: a model for accelerating the pace of discovery science in psychiatry
   • URL: https://www.frontiersin.org/articles/10.3389/fnins.2012.00152/full
   • AuthorName: K.B. Nooner, S.J. Colcombe, ..., M.P. Milham
   • AuthorURL: None

6. publication:

   • Title: An open resource for transdiagnostic research in pediatric mental health and learning disorders
   • URL: https://www.nature.com/articles/sdata2017181
   • AuthorName: L.M. Alexander, J. Escalera, ..., M.P. Milham

7. publication:

   • Title: The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions
   • URL: https://academic.oup.com/gigascience/article/6/2/giw011/2865212
   • AuthorName: D. O'Connor, N.V. Potler, ..., M.P. Milham

8. publication:

   • Title: The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.
   • URL: https://www.nature.com/articles/mp201378
   • AuthorName: A. Di Martino, C-G Yan, ..., M.P. Milham

9. publication:

   • Title: Enhancing studies of the connectome in autism using the autism brain imaging data exchange II.
   • URL: https://www.nature.com/articles/sdata201710
   • AuthorName: A. Di Martino, D. O'Connor, M.P. Milham