Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/bps_microscopy-dataset")

fs.listdir("s3://nasa-bps-training-data/Microscopy/")

Description:

Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.

Contact:

Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.

Update Frequency:

New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available.

Managed By:

https://osdr.nasa.gov/

Resources:

1. resource:
   • Description: NASA BPS Microscopy Benchmark Training Data
   • ARN: arn:aws:s3:::nasa-bps-training-data/Microscopy/
   • Region: us-west-2
   • Type: S3 Bucket
   • Explore: None

Tags:

aws-pds, fluorescence imaging, genetic, genetic maps, microscopy, GeneLab, SMD AI

Publication:

1. publication:

   • Title: NASA SMD AI Workshop Report
   • URL: https://science.nasa.gov/files/atoms/files/NASA%20SMD%20AI%20Workshop%2021%20(spreads)%20(1).pdf
   • AuthorName: SMD Artificial Intelligence (AI) Initiative

2. publication:

   • Title: Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics
   • URL: https://doi.org/10.1667/RR15338.1
   • AuthorName: Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes