gene-expressions/Dockerfile

FROM python:3.8.6

RUN mkdir model
ENV MODEL_DIR=/model
ENV MODEL_FILE=random_forest_model.pkl

RUN mkdir reports
RUN mkdir reports/metrics
ENV METRICS_DIR=/reports/metrics
ENV METRICS_FILE=eval.json

RUN mkdir data
RUN mkdir data/prepared
ADD data/prepared/ ./data/prepared/

COPY gene_expressions/train.py ./train.py
COPY gene_expressions/evaluate.py ./evaluate.py
COPY gene_expressions/predict.py ./predict.py

COPY requirements.txt ./requirements.txt
RUN pip3 install -r requirements.txt

RUN python ./train.py
RUN python ./evaluate.py ROC_AUC_curve.png Confusion_Matrix.png
# RUN python ./predict.py
CMD [ "python", "./predict.py" ]