Install DagsHub:
pip install dagshubTo stream this data directly on DagsHub
from dagshub.streaming import DagsHubFilesystem
fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/stdpopsim_kern-dataset")
fs.listdir("s3://stdpopsim")Description
Contains all resources (genome specifications, recombination maps, etc.) required for species specific simulation with the stdpopsim package. These resources are originally from a variety of other consortium and published work but are consolidated here for ease of access and use. If you are interested in adding a new species to the stdpopsim resource please raise an issue on the stdpopsim GitHub page to have the necessary files added here.
Additional information
Documentation
Update frequency
Data will be added as new species, genome assemblies, and genetic map data for already included species become available.
Managed by
Andrew Kern & Jerome Kelleher
License
Please see the individual datasets compiled here for licensing details and make sure to cite the original sources of any elements of this data that you use.
