Photo by DeepMind on Unsplash

Refgenie reference genome assets Dataset for Machine Learning

Install DagsHub:

pip install dagshub
Click on copy button to copy content

To stream this data directly on DagsHub

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/refgenie-dataset")

fs.listdir("s3://awspds.refgenie.databio.org")
Click on copy button to copy content

Description

Pre-built refgenie reference genome data assets used for aligning and analyzing DNA sequence data.

Additional information

Update frequency

As new data becomes available (roughly quarterly)

Managed by

Sheffield lab at the University of Virginia

License

Public domain

Related datasets

Allen Brain Observatory – Visual Coding AWS Public Data Set

Allen Cell Imaging Collections

Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset

Cancer Cell Line Encyclopedia (CCLE)

Launch your ML development to new heights with DagsHub

Back to top