Install DagsHub:
pip install dagshubTo stream this data directly on DagsHub
from dagshub.streaming import DagsHubFilesystem
fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/jhu-indexes-dataset")
fs.listdir("s3://genome-idx")Description
Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.
Additional information
Documentation
Update frequency
As new data becomes available; roughly quarterly
Managed by
Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern
License
Public Domain
