Clinical Trial Sequencing Project – Diffuse Large B-Cell Lymphoma Dataset for Machine Learning
Install DagsHub:
pip install dagshubTo stream this data directly on DagsHub
from dagshub.streaming import DagsHubFilesystem
fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/ctsp-dlbcl-dataset")
fs.listdir("s3://gdc-ctsp-phs001175-2-open")Description
The goal of the project is to identify recurrent genetic alterations (mutations, deletions, amplifications, rearrangements) and/or gene expression signatures. National Cancer Institute (NCI) utilized whole genome sequencing and/or whole exome sequencing in conjunction with transcriptome sequencing. The samples were processed and submitted for genomic characterization using pipelines and procedures established within The Cancer Genome Analysis (TCGA) project.
Additional information
Update frequency
Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases,
although this dataset may not be updated at every release.
Managed by
License
NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
