Tabula Muris

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/tabula-muris-dataset")

fs.listdir("s3://czb-tabula-muris")

Description:

Tabula Muris is a compendium of single cell transcriptomic data from the model organism Mus musculus comprising more than 100,000 cells from 20 organs and tissues. These data represent a new resource for cell biology, reveal gene expression in poorly characterized cell populations, and allow for direct and controlled comparison of gene expression in cell types shared between tissues, such as T-lymphocytes and endothelial cells from different anatomical locations. Two distinct technical approaches were used for most organs: one approach, microfluidic droplet-based 3’-end counting, enabled the survey of thousands of cells at relatively low coverage, while the other, FACS-based full length transcript analysis, enabled characterization of cell types with high sensitivity and coverage. The cumulative data provide the foundation for an atlas of transcriptomic cell biology. See: https://www.nature.com/articles/s41586-018-0590-4

Contact:

Tabula Muris is a compendium of single cell transcriptomic data from the model organism Mus musculus comprising more than 100,000 cells from 20 organs and tissues. These data represent a new resource for cell biology, reveal gene expression in poorly characterized cell populations, and allow for direct and controlled comparison of gene expression in cell types shared between tissues, such as T-lymphocytes and endothelial cells from different anatomical locations. Two distinct technical approaches were used for most organs: one approach, microfluidic droplet-based 3’-end counting, enabled the survey of thousands of cells at relatively low coverage, while the other, FACS-based full length transcript analysis, enabled characterization of cell types with high sensitivity and coverage. The cumulative data provide the foundation for an atlas of transcriptomic cell biology. See: https://www.nature.com/articles/s41586-018-0590-4

Update Frequency:

This is the final version of the dataset, it will not be updated.

Managed By:

https://www.czbiohub.org/

Resources:

1. resource:
   • Description: https://github.com/czbiohub/tabula-muris
   • ARN: arn:aws:s3:::czb-tabula-muris
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, biology, encyclopedic, genomic, health, life sciences, medicine

Publication:

1. publication:
   • Title: Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris.
   • URL: https://www.ncbi.nlm.nih.gov/pubmed/30283141
   • AuthorName: Tabula Muris Consortium (2019)
   • AuthorURL: https://tabula-muris.ds.czbiohub.org/