National Cancer Institute Center for Cancer Research - Diffuse Large B Cell Lymphoma (DLBCL) Genomics and Expression

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/nciccr-dlbcl-dataset")

fs.listdir("s3://gdc-nciccr-phs001444-2-open")

Description:

The study describes integrative analysis of genetic lesions in 574 diffuse large B cell lymphomas (DLBCL) involving exome and transcriptome sequencing, array-based DNA copy number analysis and targeted amplicon resequencing. The dataset contains open RNA-Seq Gene Expression Quantification data.

Contact:

The study describes integrative analysis of genetic lesions in 574 diffuse large B cell lymphomas (DLBCL) involving exome and transcriptome sequencing, array-based DNA copy number analysis and targeted amplicon resequencing. The dataset contains open RNA-Seq Gene Expression Quantification data.

Update Frequency:

Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases, although this dataset may not be updated at every release.

Managed By:

https://ctds.uchicago.edu/

Resources:

1. resource:
   • Description: RNA-Seq Gene Expression Quantification
   • ARN: arn:aws:s3:::gdc-nciccr-phs001444-2-open
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, cancer, genomic

Tools & Applications:

1. tools & applications:
   • Title: Genomic Data Commons
   • URL: https://portal.gdc.cancer.gov/projects/NCICCR-DLBCL
   • AuthorName: National Cancer Institute
   • AuthorURL: https://gdc.cancer.gov/

Publication:

1. publication:
   • Title: Genetics and Pathogenesis of Diffuse Large B Cell Lymphoma
   • URL: https://doi.org/10.1056/NEJMoa1801445
   • AuthorName: Roland Schmitz, Ph.D., George W. Wright, Ph.D., Da Wei Huang, M.D., et al.