Hecatomb Databases

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/hecatomb-dataset")

fs.listdir("s3://hecatombdatabases")

Description:

Preprocessed databases for use with the Hecatomb pipeline for viral and phage sequence annotation.

Contact:

Preprocessed databases for use with the Hecatomb pipeline for viral and phage sequence annotation.

Update Frequency:

Every 6 to 12 months

Managed By:

https://wustl.edu/

Resources:

1. resource:
   • Description: Hecatomb Database Resources
   • ARN: arn:aws:s3:::hecatombdatabases
   • Region: us-west-2
   • Type: S3 Bucket
   • Explore: Explore Bucket

Tags:

aws-pds, life sciences, genetic, genomic, metagenomics, bioinformatics, whole genome sequencing, virus

Tutorials:

1. tutorial:
   • Title: The Hecatomb Tutorial
   • URL: https://hecatomb.readthedocs.io/en/latest/tutorialPt1/
   • AuthorName: Michael Roach
   • AuthorURL: https://bioinf.cc

Publication:

1. publication:
   • Title: No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study
   • URL: https://doi.org/10.3390/pathogens10070787
   • AuthorName: Michael Roach,Adrian Cantu,Melissa Krizia Vieri,Matthew Cotten,Paul Kellam,My Phan,Lia van der Hoek,Michel Mandro,Floribert Tepage,Germain Mambandu,Gisele Musinya,Anne Laudisoit,Robert Colebunders,Robert Edwards, John L. Mokili
   • AuthorURL: https://bioinf.cc