Broad Genome References

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/broad-references-dataset")

fs.listdir("s3://broad-references")

Description:

Broad maintained human genome reference builds hg19/hg38 and decoy references.

Contact:

Broad maintained human genome reference builds hg19/hg38 and decoy references.

Update Frequency:

Monthly

Managed By:

Broad Institute

Resources:

1. resource:
   • Description: This dataset includes two human genome references assembled by the Genome Reference Consortium: Hg19 and Hg38.
   • ARN: arn:aws:s3:::broad-references
   • Region: us-east-1
   • Type: S3 Bucket

Tags:

aws-pds, biology, bioinformatics, cancer, genetic, genomic, life sciences, reference index, Homo sapiens

Tutorials:

1. tutorial:
   • Title: Using Amazon FSx for Lustre for Genomics Workflows on AWS
   • URL: https://aws.amazon.com/blogs/storage/using-amazon-fsx-for-lustre-for-genomics-workflows-on-aws/
   • AuthorName: W. Lee Pang
   • AuthorURL: https://www.linkedin.com/in/lee-pang-a039a26/
   • Services: Batch, FSx

Tools & Applications:

1. tools & applications:
   • Title: Genomics Workflows on AWS - Cromwell on AWS
   • URL: https://docs.opendata.aws/genomics-workflows/orchestration/cromwell/cromwell-examples/#real-world-example-haplotypecaller
   • AuthorName: W. Lee Pang
   • AuthorURL: https://www.linkedin.com/in/lee-pang-a039a26/

Publication:

1. publication:
   • Title: Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA
   • URL: https://www.cell.com/cell-reports-methods/pdf/S2667-2375(21)00165-X.pdf
   • AuthorName: Willey J. C., Morrison T. B., Austermiller B., Crawford E. E., et al (2021)