Biological and Physical Sciences (BPS) RNA Sequencing Benchmark Training Dataset

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/bps_rnaseq-dataset")

fs.listdir("s3://nasa-bps-training-data/RNAsequencing/")

Description:

RNA sequencing data from spaceflown and control mouse liver samples, sourced from NASA GeneLab and augmented with generative adversarial network.

Contact:

RNA sequencing data from spaceflown and control mouse liver samples, sourced from NASA GeneLab and augmented with generative adversarial network.

Update Frequency:

New spaceflight liver RNA sequencing data is added whenever it is available.

Managed By:

https://osdr.nasa.gov/

Resources:

1. resource:
   • Description: NASA BPS RNA Sequencing Benchmark Training Data
   • ARN: arn:aws:s3:::nasa-bps-training-data/RNAsequencing/
   • Region: us-west-2
   • Type: S3 Bucket
   • Explore: None

Tags:

aws-pds, space biology, gene expression, genetic, genetic maps, GeneLab, SMD AI

Publication:

1. publication:

   • Title: NASA SMD AI Workshop Report
   • URL: https://science.nasa.gov/files/atoms/files/NASA%20SMD%20AI%20Workshop%2021%20(spreads)%20(1).pdf
   • AuthorName: SMD Artificial Intelligence (AI) Initiative

2. publication:

   • Title: Adversarial generation of gene expression data
   • URL: https://doi.org/10.1093/bioinformatics/btab035
   • AuthorName: Ramon Viñas, Helena Andrés-Terré, Pietro Liò, Kevin Bryson