Allen Ivy Glioblastoma Atlas

Stream data with DDA:

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://dagshub.com/DagsHub-Datasets/allen-ivy-glioblastoma-atlas-dataset")

fs.listdir("s3://allen-ivy-glioblastoma-atlas")

Description:

This dataset consists of images of glioblastoma human brain tumor tissue sections that have been probed for expression of particular genes believed to play a role in development of the cancer. Each tissue section is adjacent to another section that was stained with a reagent useful for identifying histological features of the tumor. Each of these types of images has been completely annotated for tumor features by a machine learning process trained by expert medical doctors.

Contact:

This dataset consists of images of glioblastoma human brain tumor tissue sections that have been probed for expression of particular genes believed to play a role in development of the cancer. Each tissue section is adjacent to another section that was stained with a reagent useful for identifying histological features of the tumor. Each of these types of images has been completely annotated for tumor features by a machine learning process trained by expert medical doctors.

Update Frequency:

Never

Managed By:

http://www.alleninstitute.org/

Resources:

1. resource:
   • Description: Project data files in a public bucket
   • ARN: arn:aws:s3:::allen-ivy-glioblastoma-atlas
   • Region: us-west-2
   • Type: S3 Bucket

Tags:

aws-pds, biology, genetic, gene expression, imaging, neurobiology, image processing, life sciences, machine learning, computer vision, cancer, glioblastoma, Homo sapiens

Tutorials:

1. tutorial:
   • Title: Accessing Ivy Glioblastoma Atlas Project data
   • URL: https://github.com/AllenInstitute/open_dataset_tools/blob/main/example_notebooks/Accessing_Ivy_Glioblastoma_Atlas_Project_Data.ipynb
   • AuthorName: Allen Institute for Brain Science
   • AuthorURL: www.alleninstitute.org

Tools & Applications:

1. tools & applications:
   • Title: Ivy Glioblastoma Atlas Project
   • URL: https://glioblastoma.alleninstitute.org
   • AuthorName: Allen Institute for Brain Science
   • AuthorURL: www.alleninstitute.org

Publication:

1. publication:
   • Title: An anatomic transcriptional atlas of human glioblastoma
   • URL: http://science.sciencemag.org/content/360/6389/660
   • AuthorName: Ralph Puchalski, et al.
   • AuthorURL: www.alleninstitute.org